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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87086.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  63/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.20.1b.160.1
:412 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->137 1zatA PDBj 7e-09 29.2 %
:BLT:PDB   208->261 3bkhA PDBj 9e-04 33.3 %
:RPS:PDB   212->254 3bkhA PDBj 4e-04 34.9 %
:RPS:SCOP  30->137 1zatA1  b.160.1.1 * 1e-26 25.9 %
:RPS:SCOP  217->282 1lbuA1  a.20.1.1 * 6e-08 26.2 %
:HMM:SCOP  25->138 1zatA1 b.160.1.1 * 3.9e-31 40.4 %
:HMM:SCOP  201->282 1lbuA1 a.20.1.1 * 3.4e-09 29.6 %
:RPS:PFM   31->136 PF03734 * YkuD 6e-06 34.9 %
:HMM:PFM   31->137 PF03734 * YkuD 1.8e-22 38.7 106/116  
:HMM:PFM   216->261 PF01471 * PG_binding_1 1.4e-10 41.3 46/57  
:BLT:SWISS 31->157 YQJB_BACSU 4e-06 33.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87086.2 GT:GENE AAK87086.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1283219..1284457) GB:FROM 1283219 GB:TO 1284457 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87086.2 GB:DB_XREF GI:159139986 LENGTH 412 SQ:AASEQ MSLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAGHETPSGIFSILEKRKYHESNIYSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSKFAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDADDGKLLLSDVELRPATFDAALGAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYAGEMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAIDIKDPEVALGTHFLEAVSVDRAAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLSGVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTGTDFITVTKEGPV GT:EXON 1|1-412:0| BL:SWS:NREP 1 BL:SWS:REP 31->157|YQJB_BACSU|4e-06|33.1|124/176| SEG 381->392|ssgssitvsdis| BL:PDB:NREP 2 BL:PDB:REP 31->137|1zatA|7e-09|29.2|106/248| BL:PDB:REP 208->261|3bkhA|9e-04|33.3|54/260| RP:PDB:NREP 1 RP:PDB:REP 212->254|3bkhA|4e-04|34.9|43/260| RP:PFM:NREP 1 RP:PFM:REP 31->136|PF03734|6e-06|34.9|106/136|YkuD| HM:PFM:NREP 2 HM:PFM:REP 31->137|PF03734|1.8e-22|38.7|106/116|YkuD| HM:PFM:REP 216->261|PF01471|1.4e-10|41.3|46/57|PG_binding_1| RP:SCP:NREP 2 RP:SCP:REP 30->137|1zatA1|1e-26|25.9|108/126|b.160.1.1| RP:SCP:REP 217->282|1lbuA1|6e-08|26.2|65/83|a.20.1.1| HM:SCP:REP 25->138|1zatA1|3.9e-31|40.4|114/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| HM:SCP:REP 201->282|1lbuA1|3.4e-09|29.6|81/83|a.20.1.1|1/1|PGBD-like| OP:NHOMO 88 OP:NHOMOORG 63 OP:PATTERN -------------------------------------------------------------------- -----------1-----------------------------------------------------------------------------------------1-1------------------------111----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------32231122222------------11231211----21112211221111-----------------------------------------------------------211-----------------------------------------------------1-----1--------------------------------112-1-------1------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111------1------------------------------11-1-11---------------------------------------------------------------1-4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 161 STR:RPRED 39.1 SQ:SECSTR ##############################EEEETTTTEEEEEETTEEEEEEEcccccTTcccccEEEEccccEcccccccccccEEEEEEEccccccEEEEcTcccccTccccEEEcHHHHHHHHHHccTTcEEEE######################################################################TccccTTccHHHHHHHHHHHTTTcccccccccccHHHHHHHHHHHHHTTccccc####################################################################################################################################################### DISOP:02AL 1-1,154-176,194-219,411-413| PSIPRED cccHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEccEEEEEEEEEccccccccccEEEEEEEEEEcccccccccccccEEEEEcccEEEEEcccccccccccccccccHHHHHHHHHHcccccEEEEEcccccccccccccEEccccccccccccccccccccccccccccccccHHHHcccccccccEEccccccEEEEcccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccEEEHHHHcccccEEEEEEEEcHHHcccHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEccccc //