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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87096.1
DDBJ      :             DNA processing chain A
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  808/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.60.7c.129.1
:380 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   30->57 1cmwA PDBj 8e-04 39.3 %
:RPS:PDB   118->263 2a33B PDBj 7e-20 9.6 %
:RPS:SCOP  13->58 1ul1X1  a.60.7.1 * 6e-04 30.4 %
:RPS:SCOP  29->58 1bgxT1  a.60.7.1 * 1e-04 36.7 %
:RPS:SCOP  93->295 1wekA  c.129.1.1 * 4e-29 17.0 %
:HMM:SCOP  88->296 1wekA_ c.129.1.1 * 1.5e-37 33.5 %
:RPS:PFM   82->285 PF02481 * DNA_processg_A 4e-40 54.2 %
:HMM:PFM   80->284 PF02481 * DNA_processg_A 3.3e-70 49.3 205/212  
:BLT:SWISS 80->342 SMF_HAEIN 2e-44 42.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87096.1 GT:GENE AAK87096.1 GT:PRODUCT DNA processing chain A GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1297167..1298309) GB:FROM 1297167 GB:TO 1298309 GB:DIRECTION - GB:PRODUCT DNA processing chain A GB:PROTEIN_ID AAK87096.1 GB:DB_XREF GI:15156358 LENGTH 380 SQ:AASEQ MPHEETTRQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALDALPELSKHGGSSRRLRIATPSEAEGEIETAEKFGARFIGIGEPDYPPALRQMDGAPPLIAMKGSADAATRACVGIVGSRNASINGAKFAAMLARDCGRAGYSIASGLARGIDAAAHRASLATGTVAMLAGGLDRPYPQENFGLLQDIYDQGGATISEMPFGWEPRARDFPRRNRLIAGVSLGVVIVEAAERSGSLITARLAGEAGRLVFAVPGSPLDARCEGTNRLIKEGAMLTTGAADILEALRPLMEPQLPYDCKIEEPRSDEEMSPPGDDERSVIASALGPSPVEIDDIIRHTGFSAAAVHLVLLELDIAGRLNRHAGGRVSLFVAD GT:EXON 1|1-380:0| BL:SWS:NREP 1 BL:SWS:REP 80->342|SMF_HAEIN|2e-44|42.2|258/373| RP:PDB:NREP 2 RP:PDB:REP 30->57|1cmwA|8e-04|39.3|28/817| RP:PDB:REP 118->263|2a33B|7e-20|9.6|146/170| RP:PFM:NREP 1 RP:PFM:REP 82->285|PF02481|4e-40|54.2|203/209|DNA_processg_A| HM:PFM:NREP 1 HM:PFM:REP 80->284|PF02481|3.3e-70|49.3|205/212|DNA_processg_A| GO:PFM:NREP 1 GO:PFM GO:0009294|"GO:DNA mediated transformation"|PF02481|IPR003488| RP:SCP:NREP 3 RP:SCP:REP 13->58|1ul1X1|6e-04|30.4|46/140|a.60.7.1| RP:SCP:REP 29->58|1bgxT1|1e-04|36.7|30/116|a.60.7.1| RP:SCP:REP 93->295|1wekA|4e-29|17.0|182/208|c.129.1.1| HM:SCP:REP 88->296|1wekA_|1.5e-37|33.5|188/0|c.129.1.1|1/1|MoCo carrier protein-like| OP:NHOMO 851 OP:NHOMOORG 813 OP:PATTERN --------------------------------1-------------1--------1------------ 111-111111111111111-11--1-111111111111111111111111211111-11111311111121111121111121111111112-1111--11111111111--------------11111111111111111111111111111111111111111111111-----------111111111111-----11111121211111111111111111111111111111111111--111-111111111111111111111111111-111111111111111111111111111111111111111111111112111111111112111111111111111111111311111111111121111111111111111111211111111111111112-1111111111111111111111111111111212111112222222211111111111111111111-111-11------1-11-131111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111-11111111211111111111111111111111111--11111------12111111111111211-11111211-11111111111111111111-111111111111111111111--111111111111---11111121111121111111111111111111111-111111111111111111111111----11--11111111111111111111111111111--11111111111111-111--------------------------1111211111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 252 STR:RPRED 66.3 SQ:SECSTR #############################cTTcTTTTTGGGGccTTTcTTTcTTcEEEEEEETTEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHTTcEEEEcccccHHHHHHHHHHHTTEEEEEEccccccEEEEEccHHHHHHHHTccEEEEccccHHHHHHHHHHHHHHHTTcccccEEEEcGGGTTHHHHHHHHHHTTcccHHHHTcEEEEEcGGGHHHHHHHH################################################################################################### DISOP:02AL 1-13, 303-321| PSIPRED ccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccEEEEEEccHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHcEEEEEEEcccccHHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHcccEEEccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHccEEEEccccEEEEEEcc //