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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87163.2
DDBJ      :             glycerophosphoryl diester phosphodiesterase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  228/915 : Eukaryota  4/199 : Viruses  1/175   --->[See Alignment]
c.1.18
:239 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->208 2pz0B PDBj 5e-18 33.5 %
:RPS:PDB   6->211 3ch0A PDBj 8e-23 22.1 %
:RPS:SCOP  6->211 1v8eA1  c.1.18.3 * 7e-35 31.0 %
:HMM:SCOP  6->223 1t8qA_ c.1.18.3 * 5.1e-47 39.4 %
:RPS:PFM   8->211 PF03009 * GDPD 9e-15 37.2 %
:HMM:PFM   8->220 PF03009 * GDPD 1.2e-27 30.8 208/255  
:BLT:SWISS 7->143 YQIK_BACSU 2e-10 39.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87163.2 GT:GENE AAK87163.2 GT:PRODUCT glycerophosphoryl diester phosphodiesterase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1365645..1366364) GB:FROM 1365645 GB:TO 1366364 GB:DIRECTION - GB:PRODUCT glycerophosphoryl diester phosphodiesterase GB:PROTEIN_ID AAK87163.2 GB:DB_XREF GI:159140022 LENGTH 239 SQ:AASEQ MTAQPVAHRGYHDLNKAVWENTISAFSRAIEAGFAIECDVQLAADSVPVVFHDHDLERLTGIKGDVRERTSAELAMLSVGQTKDRVPTLKQLLTLCAGKVPLVIELKGREGEGVDDGFAEAVLEDLEGYKGHVALMSFDHHLLKDLKAAGSPWPLGLTAEGDKPEDFFRHDEAMQLGLDFISYHWGHLPNSFIEAQRKLGLPVITWTVRDENARATTYKYADQMTFEGFDPRENPSATA GT:EXON 1|1-239:0| BL:SWS:NREP 1 BL:SWS:REP 7->143|YQIK_BACSU|2e-10|39.4|132/243| BL:PDB:NREP 1 BL:PDB:REP 6->208|2pz0B|5e-18|33.5|194/243| RP:PDB:NREP 1 RP:PDB:REP 6->211|3ch0A|8e-23|22.1|199/265| RP:PFM:NREP 1 RP:PFM:REP 8->211|PF03009|9e-15|37.2|199/241|GDPD| HM:PFM:NREP 1 HM:PFM:REP 8->220|PF03009|1.2e-27|30.8|208/255|GDPD| GO:PFM:NREP 2 GO:PFM GO:0006071|"GO:glycerol metabolic process"|PF03009|IPR004129| GO:PFM GO:0008889|"GO:glycerophosphodiester phosphodiesterase activity"|PF03009|IPR004129| RP:SCP:NREP 1 RP:SCP:REP 6->211|1v8eA1|7e-35|31.0|184/217|c.1.18.3| HM:SCP:REP 6->223|1t8qA_|5.1e-47|39.4|213/0|c.1.18.3|1/1|PLC-like phosphodiesterases| OP:NHOMO 279 OP:NHOMOORG 254 OP:PATTERN -----11--------12111111----111---------------11-------11-111-1------ ----1----------------------------------------12--11----1-------1--1-1---1111--1-1------1-------------1-11---------------------------------------111-------1---------------1------------1------1-1111111111-111111322211111---21-1------33-11111111111111-111--------------------1--------------------------------------------------12---1111111-11----11112--1-11----------1--111--1-1--111111-1111111111111111-111111111-1111111111--11111211122111-1-2111111213-------------11-------------------------------111---------------------1------------1-------111------11-----1-------------11--11----1------------1-12-2---------------------------1----1--1-111-1-----------2----2------1-1--------------------------------------------------1---------------------------111111-1111---------1111-111----------------11111-------------------------------------1-----1----------------------------------------------------------------1----1-111--- -----------------------------------------------------1-----------------------------------------------------------1--------------------------------------------------------------11--------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 224 STR:RPRED 93.7 SQ:SECSTR #####EETTTTTTTTTTccTTcHHHHHHHHHHTcEEEEEEEEcTTccEEEcccccccTTTcETTEEccTTTGGGcccTTcTTccccccccccHHHHHHccEEEEEEcccGGGcTTTcccHHHHHHHTTcGGGEEEEEccHHHHHHHHHcTTcEEEEEEcccccHHHHHTTHHHccccccEEEEcGGGGccHHHHHHHHHTTEEcccccccHHHHHHHHHHTccEEEEcc########## DISOP:02AL 235-240| PSIPRED cccEEEEEcccccccccccccHHHHHHHHHHcccEEEEEEEEccccEEEEccccccHHHccccEEHHHccHHHHHcccccccccEEccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHcccEEEEccHHHccHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccEEEEcccccccccccc //