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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87179.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  388/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->206 2hs5A PDBj 3e-12 31.5 %
:RPS:PDB   3->206 3c7jA PDBj 2e-25 20.7 %
:RPS:SCOP  8->78 1e2xA1  a.4.5.6 * 4e-12 32.4 %
:RPS:SCOP  77->206 2hs5A2  a.78.1.1 * 2e-12 19.4 %
:HMM:SCOP  1->103 1v4rA1 a.4.5.6 * 3.1e-18 37.4 %
:RPS:PFM   14->72 PF00392 * GntR 1e-06 47.5 %
:RPS:PFM   106->204 PF07729 * FCD 9e-06 41.2 %
:HMM:PFM   12->72 PF00392 * GntR 1.5e-20 47.5 61/64  
:HMM:PFM   83->203 PF07729 * FCD 5.7e-18 33.1 121/125  
:BLT:SWISS 23->205 NTRA_CHEHE 1e-15 33.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87179.1 GT:GENE AAK87179.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1381486..1382196 GB:FROM 1381486 GB:TO 1382196 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK87179.1 GB:DB_XREF GI:15156455 LENGTH 236 SQ:AASEQ MQDSHTSESAQSAVEDAIISGILSARIRPGTRLSENQLASLFSVSRTRIREAMMRLETRGIVTVSPRRGWFVVEPSAEESIKVYEARRIIEYGLLRNLSTVSAQGIALLADHLDEEKAAIAKGDRQRLTCLMGDFHIRIAEIAGNDIIVEALRDLTARTIRISMLYQSDFHAQQSHDGHCRIFEAIRAADFHAAAELAIRHLDEVETGLDLTRRPDPLYELRNSLSLQPLFSSPKE GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 23->205|NTRA_CHEHE|1e-15|33.3|177/210| BL:PDB:NREP 1 BL:PDB:REP 14->206|2hs5A|3e-12|31.5|178/205| RP:PDB:NREP 1 RP:PDB:REP 3->206|3c7jA|2e-25|20.7|198/232| RP:PFM:NREP 2 RP:PFM:REP 14->72|PF00392|1e-06|47.5|59/64|GntR| RP:PFM:REP 106->204|PF07729|9e-06|41.2|97/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 12->72|PF00392|1.5e-20|47.5|61/64|GntR| HM:PFM:REP 83->203|PF07729|5.7e-18|33.1|121/125|FCD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 8->78|1e2xA1|4e-12|32.4|71/73|a.4.5.6| RP:SCP:REP 77->206|2hs5A2|2e-12|19.4|129/138|a.78.1.1| HM:SCP:REP 1->103|1v4rA1|3.1e-18|37.4|99/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1150 OP:NHOMOORG 399 OP:PATTERN ------2-11-11111-1--------------------------------------------1----- ----311-2221-11----------6----------44E8-1-26-2--131356-21----3-215535------------6------------------------1-----------------------------1132----1-----------------------1-------------1-----1-2-21111122111212124133111111---3--------24---------------1--------------------------------------------------------------------------12112----------11------1111---322232121-1121111-1----1111-----11723--31-12-5545555545B-33733726B9--CBB886B969CE86--143963665-4--------2----2-2--------------------------------5--5A8456564752222166GC32222264G8ABB234335442272F-E6242----1-1111111---212--5--1-1-------2221211-1-------3-11------------------1-------1-12-1113-11112231111212-11-----1--------1244-121111111111-111121112111111111122213--2212221222221222241111111---11111111111--------------2263---1--------22-233331511-2234435366558662465-------------21111112111------------------------------------------------------------------1------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 97.5 SQ:SECSTR HTccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGccHHHHHHHHHHHHHHHHcHcHHccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHccEEEEcTTcccccccccccEccc###### DISOP:02AL 1-12, 233-236| PSIPRED cccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHcccccc //