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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87197.2
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  60/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:251 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->90 3fmsA PDBj 4e-07 40.0 %
:RPS:PDB   2->210 3c7jA PDBj 3e-14 20.1 %
:RPS:SCOP  26->89 1zybA1  a.4.5.4 * 4e-08 7.8 %
:RPS:SCOP  108->210 2hs5A2  a.78.1.1 * 4e-04 10.2 %
:HMM:SCOP  16->127 1v4rA1 a.4.5.6 * 1e-11 25.3 %
:HMM:PFM   29->87 PF00392 * GntR 1.8e-14 35.6 59/64  
:HMM:PFM   98->220 PF07729 * FCD 6.8e-14 25.0 120/125  
:BLT:SWISS 3->90 YTUX_AGRVI 7e-07 31.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87197.2 GT:GENE AAK87197.2 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1399662..1400417) GB:FROM 1399662 GB:TO 1400417 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK87197.2 GB:DB_XREF GI:159140034 LENGTH 251 SQ:AASEQ MARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLGRTPVHNAVSRLAADTLLVVLPRHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLSHRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAANEPFLEHTLRPLHTIYRRIGFIHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRLLDCSIEPIFKI GT:EXON 1|1-251:0| BL:SWS:NREP 1 BL:SWS:REP 3->90|YTUX_AGRVI|7e-07|31.8|85/171| SEG 91->107|dlarerlllqlrrdmer| SEG 211->221|ldtalaatdal| BL:PDB:NREP 1 BL:PDB:REP 30->90|3fmsA|4e-07|40.0|60/206| RP:PDB:NREP 1 RP:PDB:REP 2->210|3c7jA|3e-14|20.1|199/232| HM:PFM:NREP 2 HM:PFM:REP 29->87|PF00392|1.8e-14|35.6|59/64|GntR| HM:PFM:REP 98->220|PF07729|6.8e-14|25.0|120/125|FCD| RP:SCP:NREP 2 RP:SCP:REP 26->89|1zybA1|4e-08|7.8|64/73|a.4.5.4| RP:SCP:REP 108->210|2hs5A2|4e-04|10.2|98/138|a.78.1.1| HM:SCP:REP 16->127|1v4rA1|1e-11|25.3|99/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 70 OP:NHOMOORG 60 OP:PATTERN -------------------------------------------------------------------- -------------------------1----------------------------1-----------1------------------------------------------------------------------------------------------------------------------------------------------------11--------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------1----11-1--11-11111111---1--2--1---211-111111--11----------------------------1----------------------------------------111111-----222-------11-1--1--11--1-----1-3132-------------------------------------------------------------------------------------------------1------1-------------------1----------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 83.3 SQ:SECSTR #HHHHHHHHHHHHHHccccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHGGTccHcccccccHHHHHHHHHHHTTc######################################### DISOP:02AL 1-28| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc //