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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87212.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  97/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:244 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->97 3c7jB PDBj 7e-06 36.4 %
:RPS:PDB   12->159 2b7oB PDBj 3e-11 7.4 %
:RPS:SCOP  16->65 1e2xA1  a.4.5.6 * 3e-08 32.0 %
:RPS:SCOP  48->155 1e2xA2  a.78.1.1 * 4e-05 20.7 %
:HMM:SCOP  1->111 1v4rA1 a.4.5.6 * 1.3e-14 39.8 %
:RPS:PFM   16->65 PF00392 * GntR 4e-07 64.0 %
:HMM:PFM   82->215 PF07729 * FCD 8e-19 29.5 122/125  
:HMM:PFM   15->71 PF00392 * GntR 2.7e-17 54.4 57/64  
:BLT:SWISS 5->146 YTUX_AGRVI 8e-08 30.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87212.1 GT:GENE AAK87212.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1415598..1416332 GB:FROM 1415598 GB:TO 1416332 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK87212.1 GB:DB_XREF GI:15156492 LENGTH 244 SQ:AASEQ MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGLLNRLPGGGFVVRRFGFADVVDAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLCFGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERASSLPFASPSAFLPDKANIGAFRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLALISD GT:EXON 1|1-244:0| BL:SWS:NREP 1 BL:SWS:REP 5->146|YTUX_AGRVI|8e-08|30.2|139/171| SEG 66->81|gggfvvrrfgfadvvd| SEG 121->132|fgdrvddvdfdg| SEG 160->173|asslpfaspsaflp| SEG 194->213|aivaaivaregaraeavare| BL:PDB:NREP 1 BL:PDB:REP 9->97|3c7jB|7e-06|36.4|88/222| RP:PDB:NREP 1 RP:PDB:REP 12->159|2b7oB|3e-11|7.4|148/438| RP:PFM:NREP 1 RP:PFM:REP 16->65|PF00392|4e-07|64.0|50/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 82->215|PF07729|8e-19|29.5|122/125|FCD| HM:PFM:REP 15->71|PF00392|2.7e-17|54.4|57/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 16->65|1e2xA1|3e-08|32.0|50/73|a.4.5.6| RP:SCP:REP 48->155|1e2xA2|4e-05|20.7|82/149|a.78.1.1| HM:SCP:REP 1->111|1v4rA1|1.3e-14|39.8|98/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 108 OP:NHOMOORG 97 OP:PATTERN -------------------------------------------------------------------- -------------------------1-------------1------------1---1-------1-----------------1------------------------------------------------------11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111------------11-------------2-1--11-----1---1---1--111-------1122---1--1-------------11-112-1-11-21111-12121-1--1--111-11------------11-------------------------------------1--1---1-----------1112--------1--11-----1----114-11-1---------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------1---------------11-11-1-----1111-1-1-1111-111--------------------------11-11------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 159 STR:RPRED 65.2 SQ:SECSTR ccccccccHHHHHHHHHHHHHHHHHTTccEEEEEEccccccTccHHHHHHHHHHHHHHHHHHHHHTcEEEEEEccccccccccccccTTcccccccTTcccccccTTHHHHHHHHHHHHHHHHHHHTcGGGcHHHHHHHHHHHHHccTTHHHHHHHHHH##################################################################################### DISOP:02AL 1-11, 243-244| PSIPRED ccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccc //