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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87229.2
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  168/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1b.82.1
:244 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   137->240 1d5yA PDBj 2e-09 34.0 %
:RPS:PDB   13->64 2d40D PDBj 2e-05 11.5 %
:RPS:PDB   138->241 1bl0A PDBj 2e-17 24.0 %
:RPS:SCOP  5->142 1sfnA  b.82.1.11 * 3e-06 9.7 %
:RPS:SCOP  137->239 1v4aA1  a.24.16.4 * 4e-16 18.4 %
:HMM:SCOP  137->188 1d5yA1 a.4.1.8 * 0.0001 28.8 %
:HMM:SCOP  191->240 1d5yA2 a.4.1.8 * 8.2e-12 46.0 %
:HMM:PFM   155->188 PF00165 * HTH_AraC 2.5e-07 26.5 34/42  
:HMM:PFM   200->239 PF00165 * HTH_AraC 7.4e-11 35.9 39/42  
:HMM:PFM   12->63 PF02311 * AraC_binding 4.4e-07 23.1 52/136  
:BLT:SWISS 8->238 LUMQ_PHOLE 2e-11 25.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87229.2 GT:GENE AAK87229.2 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1432866..1433600) GB:FROM 1432866 GB:TO 1433600 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AraC family GB:PROTEIN_ID AAK87229.2 GB:DB_XREF GI:159140048 LENGTH 244 SQ:AASEQ MTVASADIRTYRQERPRERHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDAPHTQEATDINHSLVVDIDESVVSERTLEKFARTPFLDIAPDTRQLITYMRGVIGTDGRRDDVTGLWAPLLVDSLANERADIRKRLRWLGAVVGAEPFFPWTIDMLAACASISESRLHALFIEEFGLSPHRWLVGLRMDKVCTLLRESSLPIAEIALRSGFSDQTALTRALRNAVGETPAAYRRNRGIH GT:EXON 1|1-244:0| BL:SWS:NREP 1 BL:SWS:REP 8->238|LUMQ_PHOLE|2e-11|25.3|221/248| BL:PDB:NREP 1 BL:PDB:REP 137->240|1d5yA|2e-09|34.0|100/288| RP:PDB:NREP 2 RP:PDB:REP 13->64|2d40D|2e-05|11.5|52/281| RP:PDB:REP 138->241|1bl0A|2e-17|24.0|104/116| HM:PFM:NREP 3 HM:PFM:REP 155->188|PF00165|2.5e-07|26.5|34/42|HTH_AraC| HM:PFM:REP 200->239|PF00165|7.4e-11|35.9|39/42|HTH_AraC| HM:PFM:REP 12->63|PF02311|4.4e-07|23.1|52/136|AraC_binding| RP:SCP:NREP 2 RP:SCP:REP 5->142|1sfnA|3e-06|9.7|124/245|b.82.1.11| RP:SCP:REP 137->239|1v4aA1|4e-16|18.4|103/151|a.24.16.4| HM:SCP:REP 137->188|1d5yA1|0.0001|28.8|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 191->240|1d5yA2|8.2e-12|46.0|50/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 298 OP:NHOMOORG 169 OP:PATTERN -------------------------------------------------------------------- ----2--------------------1-------111111--1-2---1------------1-1---2213----------1------------------------2--------------------------------------1-21----------------1-------------------------------------------------------------------3-----------------------------------------1--------------------------------------------------------------------111---------------------------1-12----------51---11-121-111-111113-11--11-222--522122233-5422-----12-221-----------------1--------------------------------1------11333323----22422222-13252242--333---------2---1-----21111--1----2--1------------------------2--3-----------------------------42----1-1-----------------------------------------------------------------------------1---------------------------111111111111---------1-----31--------------------------1-43342211223331233----------111211111--22222-1-11------------------------------------------------------------------ -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 211 STR:RPRED 86.5 SQ:SECSTR ############ccccccEEcccEEEEEEEccEEEEETTEEEEEcTTcEEEEcTTccEEEEEccTccEEEEEETGGGGGGccccccTTcEEccccTTTHHHHHHHHHHH##################HHHTTccHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcc### DISOP:02AL 1-1,128-138,239-245| PSIPRED ccccEEEEEEccccccccccccEEEEEEEccEEEEEEccEEEEEcccEEEEEccccEEEEEEcccccEEEEEEcHHHccccHHccccccEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccc //