[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87282.1
DDBJ      :             sodium bile acid symporter family protein
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  331/915 : Eukaryota  79/199 : Viruses  0/175   --->[See Alignment]
:352 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   48->239 PF01758 * SBF 6e-16 37.9 %
:HMM:PFM   47->241 PF01758 * SBF 7.9e-34 33.1 181/187  
:HMM:PFM   329->338 PF02208 * Sorb 0.00076 60.0 10/47  
:BLT:SWISS 1->341 Y944_SYNY3 1e-71 47.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87282.1 GT:GENE AAK87282.1 GT:PRODUCT sodium bile acid symporter family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1480029..1481087) GB:FROM 1480029 GB:TO 1481087 GB:DIRECTION - GB:PRODUCT sodium bile acid symporter family protein GB:PROTEIN_ID AAK87282.1 GB:DB_XREF GI:15156574 LENGTH 352 SQ:AASEQ MSAFERYLTVWVFLCTVVGVALGHLMPGLFQLIAAAEIAKVNIPVAVLIWLMIIPMLLKIDFRSLSQVGAFWRGIGVTLFINWAVKPFSMAMLGWFFLGWLFRPYLPADQIDSYIAGLIILAAAPCTAMVFVWSNLTRGEPLFTLSQVALNDAIMVVAFAPIVGLLLGLSAITVPWDTLILSVVLYIVVPVILAQIIRSRLMAAGTSATLDRFLSTLQPISLVALLATLILLFAFQGEQIIAQPAVIGLLAIPILIQVYLNSGLAYLLNRMTGERHCVAGPSALIGASNFFELAVAAAISLFGLQSGAALATVVGVLIEVPIMLSVVWIVNRSKDWYEAAPAVSRTTITERQ GT:EXON 1|1-352:0| BL:SWS:NREP 1 BL:SWS:REP 1->341|Y944_SYNY3|1e-71|47.5|339/383| TM:NTM 10 TM:REGION 8->30| TM:REGION 43->65| TM:REGION 86->108| TM:REGION 114->136| TM:REGION 146->168| TM:REGION 177->198| TM:REGION 216->238| TM:REGION 247->269| TM:REGION 280->302| TM:REGION 310->332| SEG 222->234|lvallatlillfa| RP:PFM:NREP 1 RP:PFM:REP 48->239|PF01758|6e-16|37.9|177/182|SBF| HM:PFM:NREP 2 HM:PFM:REP 47->241|PF01758|7.9e-34|33.1|181/187|SBF| HM:PFM:REP 329->338|PF02208|0.00076|60.0|10/47|Sorb| GO:PFM:NREP 3 GO:PFM GO:0006814|"GO:sodium ion transport"|PF01758|IPR002657| GO:PFM GO:0008508|"GO:bile acid:sodium symporter activity"|PF01758|IPR002657| GO:PFM GO:0016020|"GO:membrane"|PF01758|IPR002657| OP:NHOMO 506 OP:NHOMOORG 431 OP:PATTERN -----------------------1---11111--1--1-1--1-11-11-111--1--1-1---1--- 111--1-12221-121-11-12--1111111-11212212----1-111-----111-----1-1-1-211-----2-------------21-------1-3-1111211----------------1-111111-1----111---111111111111-1-1111--12111--1--11-1-------------111111211112111-----1111-212---2-----1----------------------------1--1--------------1--------------------------------------------1311111111-----1-11----1-11----1-31-211-111-------1111--2-----111-1-1311111----------1-22113-1-1-1-1111------1--21111-31111-1--------------111-------------------------------1-2-----21111111111-552-1111-111111111121-12-2111-11-1-11--112---1----2-112--111-11-11----1111111-11111--11----1-1-1------------------112111111-11-11--11111-1111-11----1-1--------1-------------------------------------------------1-------------1-------------------1---------111--111----------1121122-----1---------1---12---1----1-----111-----1111121---------------111------------------------------------------21--1---11- ------1-------1-2121321111111----111111111111111121112111112-11-1-2--1----1-11-1111111---11121-2111-1-1111------------------------------------------------------------------------------11---2-1--2112- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 338-352| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHEEcccHHHHHHHHHHHHHHHHcEEcHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc //