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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87394.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  264/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.20.1b.160.1
:642 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   300->561 3bkhA PDBj 7e-16 8.5 %
:RPS:SCOP  305->382 1lbuA1  a.20.1.1 * 5e-07 23.2 %
:RPS:SCOP  408->544 1zatA1  b.160.1.1 * 2e-16 12.7 %
:HMM:SCOP  301->382 1lbuA1 a.20.1.1 * 5.4e-06 27.4 %
:HMM:SCOP  407->561 1zatA1 b.160.1.1 * 1.4e-17 31.4 %
:RPS:PFM   536->563 PF03734 * YkuD 3e-04 59.3 %
:HMM:PFM   411->572 PF03734 * YkuD 4.1e-21 35.9 103/116  
:HMM:PFM   349->382 PF01471 * PG_binding_1 9.2e-10 32.4 34/57  
:BLT:SWISS 305->637 YCBB_ECOLI 2e-36 30.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87394.1 GT:GENE AAK87394.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1597528..1599456) GB:FROM 1597528 GB:TO 1599456 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87394.1 GB:DB_XREF GI:15156702 LENGTH 642 SQ:AASEQ MLGATRIKLQVTSGKSSAALVLALGLSVSTALPGSAGAVTLMDLLRGGPGKIARDRGELPPAGIVTSPSGSGSSAGQSADASDPEPLPRVSGPRYYDYKADAARVVNTANFGEGLANLKFSATPEIGKALEAYYGAGGKTLWVSGGELTERANAVLAFFETVGESGLDPADYSISAPARDVTASISNNAAGTTATGTPVETASVSTSDSYQRAQMQFELALSAKVLAYVQDTTRGRVDPNRLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREPSSAEYLALKAELARLRGEGDTAHTVRVPADLVLKPGNSSADMASVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVRWLPADLGQRYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDPSYLDRLGYEVQVGGRAVSSSSVNWYGSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGSSVDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDSYVQKAFAVTTKARAASI GT:EXON 1|1-642:0| BL:SWS:NREP 1 BL:SWS:REP 305->637|YCBB_ECOLI|2e-36|30.9|320/615| SEG 13->32|sgkssaalvlalglsvstal| SEG 67->84|spsgsgssagqsadasdp| SEG 182->197|tasisnnaagttatgt| RP:PDB:NREP 1 RP:PDB:REP 300->561|3bkhA|7e-16|8.5|246/260| RP:PFM:NREP 1 RP:PFM:REP 536->563|PF03734|3e-04|59.3|27/136|YkuD| HM:PFM:NREP 2 HM:PFM:REP 411->572|PF03734|4.1e-21|35.9|103/116|YkuD| HM:PFM:REP 349->382|PF01471|9.2e-10|32.4|34/57|PG_binding_1| RP:SCP:NREP 2 RP:SCP:REP 305->382|1lbuA1|5e-07|23.2|69/83|a.20.1.1| RP:SCP:REP 408->544|1zatA1|2e-16|12.7|118/126|b.160.1.1| HM:SCP:REP 301->382|1lbuA1|5.4e-06|27.4|73/83|a.20.1.1|1/1|PGBD-like| HM:SCP:REP 407->561|1zatA1|1.4e-17|31.4|105/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| OP:NHOMO 337 OP:NHOMOORG 264 OP:PATTERN -------------------------------------------------------------------- -21------------------------------------------------------------------------------------1------------1411-422-2---------------111111111-1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------1113-----222111111111111221222222-33334333221122222222222211--11111111111-------------111------------------------------11211-----------------------------1111-----1--11-1------1-------------11-11-411-1-1---------------1-------21-----------------------15--111121----11111111222211222121--1-1--------11111111111111111-1111111111111111111111111-1111111111111111111111111--111111111111--11---------1-1-1111111-11111111----------11-----111-----1-------------11121111111111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 40.0 SQ:SECSTR ###########################################################################################################################################################################################################################################################################################################cHHHHHHTccccTTcccHHHHHHHHTTTcccccccccccHHHHHHHHHHHHHTTccccccccHHHHHTccHHHHccHHHHHHHccccccGGGccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHTTccccccTTccccTTTTccHHHHHHHHHHGGGTccccTTcGGGGcHHHHHHHHHHHHHHHHHGGGccccccHHHHHHHHHHcHTTccTTccHHHHcHHHHHHcHHHHccTTcccccHHHH#####HHHHHHH################################################################################# DISOP:02AL 1-4, 53-83, 633-636, 638-642| PSIPRED ccccEEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHccccccccccHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccEEcHHHHHHHccccHHHHHHHHHHHHHHHHccHHHccccEEEEEEccEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHccHHHHHHcccEEEEccccccccccccccccccEEEEEccccccccccEEEEccccccEEEcccccccccccccccEEccEEEEccHHHHHHHHHcccHHHHHHHHHccccEEEEEcccccEEEEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHcccc //