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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87403.2
DDBJ      :             transcriptional regulator, TetR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  160/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:219 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->209 3bhqA PDBj 2e-09 26.7 %
:RPS:PDB   5->207 3e7qB PDBj 9e-18 18.0 %
:RPS:SCOP  20->80 1z77A1  a.4.1.9 * 2e-14 29.5 %
:RPS:SCOP  86->188 2id3A2  a.121.1.1 * 3e-05 18.6 %
:HMM:SCOP  6->94 1t33A1 a.4.1.9 * 9.2e-15 30.7 %
:RPS:PFM   22->67 PF00440 * TetR_N 3e-07 50.0 %
:HMM:PFM   22->67 PF00440 * TetR_N 1.1e-18 52.2 46/47  
:HMM:PFM   90->196 PF03328 * HpcH_HpaI 0.00021 16.5 97/221  
:BLT:SWISS 7->124 YDES_BACSU 2e-12 32.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87403.2 GT:GENE AAK87403.2 GT:PRODUCT transcriptional regulator, TetR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1610646..1611305 GB:FROM 1610646 GB:TO 1611305 GB:DIRECTION + GB:PRODUCT transcriptional regulator, TetR family GB:PROTEIN_ID AAK87403.2 GB:DB_XREF GI:159140127 LENGTH 219 SQ:AASEQ MVTENSQSRRGRPVNEALGQTIVDTAGELFAELGFQATTLDKVAQRAKISKLSIYRHFENKEALFGAAFAARCHQLIPQVLFEGVDGSAEDQLMAVGSSLLRTLLRPDVRSVEAMVTADVTSQKSLSKIHYEAGPAHMIAQIEALLRQLHAKALLNVPDPVQSARLFAALFKGSDLLIIARFDEARAEDDNEIESYCRSAVAMFMAAHGGDDHVCAQPG GT:EXON 1|1-219:0| BL:SWS:NREP 1 BL:SWS:REP 7->124|YDES_BACSU|2e-12|32.5|114/198| BL:PDB:NREP 1 BL:PDB:REP 22->209|3bhqA|2e-09|26.7|172/194| RP:PDB:NREP 1 RP:PDB:REP 5->207|3e7qB|9e-18|18.0|200/210| RP:PFM:NREP 1 RP:PFM:REP 22->67|PF00440|3e-07|50.0|46/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 22->67|PF00440|1.1e-18|52.2|46/47|TetR_N| HM:PFM:REP 90->196|PF03328|0.00021|16.5|97/221|HpcH_HpaI| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 20->80|1z77A1|2e-14|29.5|61/75|a.4.1.9| RP:SCP:REP 86->188|2id3A2|3e-05|18.6|102/123|a.121.1.1| HM:SCP:REP 6->94|1t33A1|9.2e-15|30.7|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 203 OP:NHOMOORG 161 OP:PATTERN -------------------------------------------------------------------- -------------------------------------11--1-1-1--------------------1---------------------------------------------------------------------------------1-11---------------11------------------------11111-1--------------1-----------------1-----------------------------------------------------------------------------------------------------------------------------------------------3111-----234-2--1521-211111-1-11--21111212-11-31121112221113----21----11-11111111-1112112------------------------------1---1----21---2------------------1111-----2---1-------------11-------------------------1------------1111----------------------------------1----1--1111111111111111111----------------2------------------------------------11------------------------------------------------------121-----------------111211------12221221111111----------------2-------1--1111211111--------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 208 STR:RPRED 95.0 SQ:SECSTR ####cTccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHTcHHHHcGGGHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHHTHHHHH####### DISOP:02AL 1-21,214-216,218-220| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHccccc //