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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87408.1
DDBJ      :             phospholipase D family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  248/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.136.1
:518 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   141->234 1byrA PDBj 2e-06 19.1 %
:RPS:PDB   312->471 3bsdA PDBj 1e-17 12.3 %
:RPS:SCOP  166->246 1f0iA1  d.136.1.2 * 7e-13 23.4 %
:RPS:SCOP  286->472 1xdoA3  d.136.1.4 * 9e-22 12.4 %
:HMM:SCOP  58->251 1f0iA1 d.136.1.2 * 1.5e-40 33.0 %
:HMM:SCOP  296->503 1f0iA1 d.136.1.2 * 2.2e-32 28.4 %
:HMM:PFM   174->198 PF00614 * PLDc 0.00049 32.0 25/28  
:HMM:PFM   411->435 PF00614 * PLDc 0.00015 24.0 25/28  
:BLT:SWISS 68->515 YMDC_ECOLI 6e-76 38.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87408.1 GT:GENE AAK87408.1 GT:PRODUCT phospholipase D family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1615171..1616727 GB:FROM 1615171 GB:TO 1616727 GB:DIRECTION + GB:PRODUCT phospholipase D family protein GB:PROTEIN_ID AAK87408.1 GB:DB_XREF GI:15156719 LENGTH 518 SQ:AASEQ MTAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWNEKNALCLLHSNLDAFAVRVAAARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVRLLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILHRSLELVLRFRSVNRRMHNKAWIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVRSLLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADPPEKAAGKRRKGHNFLMESLLPLMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAILTNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQGSFTLRGSGQASLHTKAFTRDGETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIVWMTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL GT:EXON 1|1-518:0| BL:SWS:NREP 1 BL:SWS:REP 68->515|YMDC_ECOLI|6e-76|38.5|441/473| TM:NTM 1 TM:REGION 3->25| SEG 74->85|afavrvaaaraa| SEG 111->128|aaadrgvrvrlllddlgv| RP:PDB:NREP 2 RP:PDB:REP 141->234|1byrA|2e-06|19.1|89/152| RP:PDB:REP 312->471|3bsdA|1e-17|12.3|138/359| HM:PFM:NREP 2 HM:PFM:REP 174->198|PF00614|0.00049|32.0|25/28|PLDc| HM:PFM:REP 411->435|PF00614|0.00015|24.0|25/28|PLDc| RP:SCP:NREP 2 RP:SCP:REP 166->246|1f0iA1|7e-13|23.4|77/256|d.136.1.2| RP:SCP:REP 286->472|1xdoA3|9e-22|12.4|177/187|d.136.1.4| HM:SCP:REP 58->251|1f0iA1|1.5e-40|33.0|182/0|d.136.1.2|1/2|Phospholipase D/nuclease| HM:SCP:REP 296->503|1f0iA1|2.2e-32|28.4|190/0|d.136.1.2|2/2|Phospholipase D/nuclease| OP:NHOMO 303 OP:NHOMOORG 249 OP:PATTERN -------------------------------------------------------------------- -11----------1------------------------------2-1--111211-1-11----------------------------------------------1-------------------------------------------------------------------------------------------------1---1----1---1------------------------------------------------11----------------------------------------------------------1----------------1-1-1-------------------------1-1-----1111-----1-------------------------1--21--11---112111-1---2-11111-1-----------------------------------------------------21212222211111111221111-12222222-111--111121116-11--1----1111111------1-----1--------111-21-1----1---------------111111111----3--11--2-11-1-1------1111-1-11-2------1-------12---111111111111-1111111111111111111--------1111111111111111-11111-1----------------------------1--------1--------12221112223-111111111111111111----------1111------113132322221221111---------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 340 STR:RPRED 65.6 SQ:SECSTR ######################################################################################cEEEEEEcccc#GGGTTTTHHHHHHHHHTTcEEEEEEEccccccccHHHHHHHHHTTcEEEEEEcccHHHHHHHTTccE##EEEcccccEEEEEEETTEEEEEEEcccccTTTTTTccEEEEEEcHHHHHHHTccHHHHHHHHTTccc#########################################EEEEcTTccTTcGGGGGcccTTcccccccGGGcEE#EEEEEEEEEEEEccccHHHHTTTTTccGGGccccEEEEEEEEEETTEEEEEcEEEEEEEccEEEcccccEEEccccHHHHHHHccccc#########HTTTTccccEEEEEEEEEccTTcEEEEEccccTEEETccEEETTEEEHHHHHHHHTccccccEHHHHHHHHT###################################### DISOP:02AL 27-40| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHEEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHccccEEEEEccccccccEEEccccccccccccccccccEEEEEcccEEEEEcccccHHHcccccccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccHHHccccccccccHHHHHHHccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccccEEccccccEEEEEEEEcccEEEEEcccccHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHcccEEcEEHcccccccEEEccccEEEEEEccccccHHHHHHHHHHHHcccHHcc //