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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87473.2
DDBJ      :             lipoprotein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  662/915 : Eukaryota  4/199 : Viruses  8/175   --->[See Alignment]
b.84.3d.7.1
:537 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   420->536 2hsiB PDBj 2e-14 37.3 %
:RPS:PDB   184->241 2djpA PDBj 2e-07 25.9 %
:RPS:PDB   300->342 1e01A PDBj 1e-10 31.0 %
:RPS:PDB   420->537 2b44A PDBj 9e-21 27.1 %
:RPS:SCOP  185->231 1e0gA  d.7.1.1 * 6e-07 25.5 %
:RPS:SCOP  305->537 1qwyA  b.84.3.2 * 9e-25 16.4 %
:HMM:SCOP  184->231 1e0gA_ d.7.1.1 * 4.2e-05 39.1 %
:HMM:SCOP  300->536 1qwyA_ b.84.3.2 * 6.2e-41 31.3 %
:RPS:PFM   300->341 PF01476 * LysM 2e-04 47.6 %
:RPS:PFM   440->526 PF01551 * Peptidase_M23 4e-16 48.8 %
:HMM:PFM   438->532 PF01551 * Peptidase_M23 1.6e-29 42.6 94/96  
:HMM:PFM   189->231 PF01476 * LysM 8.5e-10 35.7 42/44  
:HMM:PFM   300->342 PF01476 * LysM 2.4e-14 39.5 43/44  
:BLT:SWISS 185->343 P60_LISIV 3e-08 37.1 %
:BLT:SWISS 417->536 NLPD_SALTY 1e-20 41.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87473.2 GT:GENE AAK87473.2 GT:PRODUCT lipoprotein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1684808..1686421) GB:FROM 1684808 GB:TO 1686421 GB:DIRECTION - GB:PRODUCT lipoprotein GB:PROTEIN_ID AAK87473.2 GB:DB_XREF GI:159140156 LENGTH 537 SQ:AASEQ MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGAYGQAPVPQGDMNGGYASAAPQGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSELSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQAAAPTDNLTTATVRSDKNGWHTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAAKDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGYKVQPGDSLAKIARANGVSVAALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAAAAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEKKADMASIAPESTGIGKYRWPVRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDGKVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE GT:EXON 1|1-537:0| BL:SWS:NREP 2 BL:SWS:REP 185->343|P60_LISIV|3e-08|37.1|151/524| BL:SWS:REP 417->536|NLPD_SALTY|1e-20|41.0|117/377| SEG 144->164|psaqrpaapslaaparqaaap| SEG 284->299|gkltppggkplppsgg| SEG 351->369|tasvpakeaaaakpvetas| SEG 377->393|apaaaattaapatpata| BL:PDB:NREP 1 BL:PDB:REP 420->536|2hsiB|2e-14|37.3|110/228| RP:PDB:NREP 3 RP:PDB:REP 184->241|2djpA|2e-07|25.9|58/77| RP:PDB:REP 300->342|1e01A|1e-10|31.0|42/48| RP:PDB:REP 420->537|2b44A|9e-21|27.1|118/129| RP:PFM:NREP 2 RP:PFM:REP 300->341|PF01476|2e-04|47.6|42/44|LysM| RP:PFM:REP 440->526|PF01551|4e-16|48.8|86/96|Peptidase_M23| HM:PFM:NREP 3 HM:PFM:REP 438->532|PF01551|1.6e-29|42.6|94/96|Peptidase_M23| HM:PFM:REP 189->231|PF01476|8.5e-10|35.7|42/44|LysM| HM:PFM:REP 300->342|PF01476|2.4e-14|39.5|43/44|LysM| GO:PFM:NREP 1 GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| RP:SCP:NREP 2 RP:SCP:REP 185->231|1e0gA|6e-07|25.5|45/48|d.7.1.1| RP:SCP:REP 305->537|1qwyA|9e-25|16.4|226/234|b.84.3.2| HM:SCP:REP 184->231|1e0gA_|4.2e-05|39.1|46/48|d.7.1.1|1/2|LysM domain| HM:SCP:REP 300->536|1qwyA_|6.2e-41|31.3|230/270|b.84.3.2|1/1|Duplicated hybrid motif| OP:NHOMO 1780 OP:NHOMOORG 674 OP:PATTERN -------------------------------------------------------------------- 111--2132221-111111-151111111111212255371--1-1-----1231-12--221-222543-------------2142112-122111--12112211-21---------------1-232223222111-----228313122332211121111335441-2-----2----31122222-1-------------1--212211------11131-----52--------------------1----------------------12-111-----------------------------------------333--11111111113-11-332-15-142-536435444424556521-13-311121111113222122222222222222222-221221221231222322222222212232211111121-------------42312-11111----21221111111111111-33443655565555553455433665555364563233221113332222133333324342422222223433343332132324333353631434443333413--1-2133232212111111131-22115521424242233323423323324323321-113441-----44333434444444444-4444444444444444444444223334444444444444444444344443143333333333322322222234441333222223333322333333333321114266663544544444455---------2455633333442555545355444443411446677773443434352--------------------------1211111111--- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4--1--1--1---- -1--------------------------------------------------------------------------------1---------------------11--------------------1-------111-------------------------------------- STR:NPRED 296 STR:RPRED 55.1 SQ:SECSTR #######################################################################################################################################################################################EcEEEEEcTTccHHHHHHHHTccHHHHHHHccccccccccTTEEEEEcEEcccccccc##########################################################HHHTTTccHHHHHHHHHHHHHHHcccTTccGGGcTTcTTcccTTTTcccHHHHHHHHHHTTcccccHHHHHHHHHHHHHTTccccccccccHHHHHTccccHcTHHHHHHHHHHHHccccccTHHHHTccEEEccEEcTTcEEEEccTTcEEEccccEEEEEEEEccccccEEEEEEETTccEEEEEEEccccccTTcEEcTTcEEEEccccccccccEEEEEEEcGGGEEccHHHHc DISOP:02AL 1-10,47-64,84-102,117-123,135-161,164-181,268-283| PSIPRED ccccccccccHHHHHHHHHHHHHHccccccccccEEccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEcccccHHHHHHHHcccHHHHHHHcccccHHHcccccEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEccccHHHHHHHHcccHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEcccccccEEEccccEEEEEEccccccccEEEEEccccEEEEEEEccccccccccEEEcccEEEEEEccccccccEEEEEEEEccEEccHHHHcc //