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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87536.2
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  334/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   104->193 3er6D PDBj 4e-08 27.8 %
:BLT:PDB   228->323 1ti9A PDBj 3e-07 25.0 %
:RPS:PDB   35->234 3bhnA PDBj 1e-35 16.5 %
:RPS:PDB   225->335 1bl0A PDBj 7e-18 22.5 %
:RPS:SCOP  9->189 1u9cA  c.23.16.2 * 6e-22 11.9 %
:RPS:SCOP  210->324 1v4aA1  a.24.16.4 * 4e-14 9.6 %
:HMM:SCOP  7->202 1pe0A_ c.23.16.2 * 1.2e-41 29.3 %
:HMM:SCOP  222->275 1d5yA1 a.4.1.8 * 2e-10 37.0 %
:HMM:SCOP  276->340 1d5yA2 a.4.1.8 * 6.1e-13 27.7 %
:RPS:PFM   103->183 PF01965 * DJ-1_PfpI 2e-07 35.9 %
:HMM:PFM   236->273 PF00165 * HTH_AraC 4.2e-09 36.8 38/42  
:HMM:PFM   288->323 PF00165 * HTH_AraC 2.5e-10 31.4 35/42  
:HMM:PFM   50->184 PF01965 * DJ-1_PfpI 1.6e-13 22.8 127/148  
:BLT:SWISS 2->319 GLXA_RHIME 6e-40 32.4 %
:PROS 277->319|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87536.2 GT:GENE AAK87536.2 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1750875..1751915 GB:FROM 1750875 GB:TO 1751915 GB:DIRECTION + GB:PRODUCT transcriptional regulator, AraC family GB:PROTEIN_ID AAK87536.2 GB:DB_XREF GI:159140186 LENGTH 346 SQ:AASEQ MSRNSQKKRSIVFFLIPQFTMLPFAAAVETLRIANRMLGYAAYEWRLSSLDGQKVMSSSGICLEVDTCLADERRYVSGENRPEMAIICSGIDVDQHVNKSVNAWLREAYNRGIAIGSLCTAAHILAQAGLLNGKRCAIHWENLPGFSEAFPQVEVYADLFEVDSNIYTCAGGTASLDMMLSLIGQDFGENLVNRVCEQQLTDRVRSPNDRQRLPLRARLGVQNSKVLSIIELMEGNLSEPLSLLDIADAADLSRRQVERLFRQEMGRSPARYYLEIRLDRARHLLVQSAMPVVEVAVACGFVSASHFSKCYREIYNRTPQQERAERKLLISASRMAMASQGGKAAH GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 2->319|GLXA_RHIME|6e-40|32.4|309/324| PROS 277->319|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 243->252|lldiadaadl| BL:PDB:NREP 2 BL:PDB:REP 104->193|3er6D|4e-08|27.8|90/191| BL:PDB:REP 228->323|1ti9A|3e-07|25.0|96/129| RP:PDB:NREP 2 RP:PDB:REP 35->234|3bhnA|1e-35|16.5|188/208| RP:PDB:REP 225->335|1bl0A|7e-18|22.5|111/116| RP:PFM:NREP 1 RP:PFM:REP 103->183|PF01965|2e-07|35.9|78/135|DJ-1_PfpI| HM:PFM:NREP 3 HM:PFM:REP 236->273|PF00165|4.2e-09|36.8|38/42|HTH_AraC| HM:PFM:REP 288->323|PF00165|2.5e-10|31.4|35/42|HTH_AraC| HM:PFM:REP 50->184|PF01965|1.6e-13|22.8|127/148|DJ-1_PfpI| RP:SCP:NREP 2 RP:SCP:REP 9->189|1u9cA|6e-22|11.9|176/221|c.23.16.2| RP:SCP:REP 210->324|1v4aA1|4e-14|9.6|115/151|a.24.16.4| HM:SCP:REP 7->202|1pe0A_|1.2e-41|29.3|184/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 222->275|1d5yA1|2e-10|37.0|54/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 276->340|1d5yA2|6.1e-13|27.7|65/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 1215 OP:NHOMOORG 340 OP:PATTERN -------------------------------------------------------------------- 1---8--1--1---511----5--18-----153337584-2-632------211-----421-4-9BB7--------------------1-----1--------923-7------------------------------1---2-4121----------------1---------------------11-------------------1---------------------1-------------------1------------------------------1-----1---------------------------------1---------------1----------------------------------3--5332-----33344---11-2-22222221225-763455353B2-877574BGC89873-12437413357B--------4--12--2-------------------------------11--12115BGGEHC78886CCLG99992AIDJ5C53--335--21-4-2134161--1131-----------1-12---1--1-1--1-112---3------23-----------------------------1121222-41-21111--1211-1122--1------1------21421511331111111-31111111213111111115741233-1111111111111111211111111-2--11--11111--------------2655---1-----------11122-1-121177877AFF9ACAE3967-------------2111-1131231111-11------------------------------------------------------------------ -------------------------------------111--1-------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 332 STR:RPRED 96.0 SQ:SECSTR ###ccccccEEEEEEcTTccHHHHHHHHHHHHHTHHHHTTccccEEEEEEEcccEEEcTTcEEEccEEGGGGGGcGTTGccccEEEEcccTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEEcccEcccEEEETTEEEEccGGGHHHHHHHHHHHHccHHHHHHHHTTTccTTcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccccTTccc########### DISOP:02AL 1-6,8-10,324-347| PSIPRED ccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEccccEEccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEEHHHHHHHHHcccccccEEEEcHHHHHHHHHHcccccccccEEEEcccEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHcHHccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccc //