[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87541.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  77/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.34.17
:109 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->92 1vbvA PDBj 5e-05 33.8 %
:RPS:SCOP  6->95 1vbvA1  b.34.17.1 * 2e-18 31.0 %
:HMM:SCOP  5->99 1vbvA1 b.34.17.1 * 6.8e-32 42.9 %
:RPS:PFM   6->99 PF08755 * YccV-like 2e-19 45.7 %
:HMM:PFM   6->102 PF08755 * YccV-like 1.2e-40 48.5 97/100  
:BLT:SWISS 6->97 HSPQ_ERWCT 5e-12 38.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87541.2 GT:GENE AAK87541.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1756761..1757090 GB:FROM 1756761 GB:TO 1757090 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87541.2 GB:DB_XREF GI:159140684 LENGTH 109 SQ:AASEQ MKQRDAKFTLGEIVRHKVFPFRGVVIDVDPEYANTEEWWNAIPAEIRPERDQPFYHLLAENEETEYVAYVSEQNLVHDENDTPLRNPNIGRIFDKAPNGEWRPKISTAH GT:EXON 1|1-109:0| BL:SWS:NREP 1 BL:SWS:REP 6->97|HSPQ_ERWCT|5e-12|38.5|91/102| BL:PDB:NREP 1 BL:PDB:REP 6->92|1vbvA|5e-05|33.8|68/77| RP:PFM:NREP 1 RP:PFM:REP 6->99|PF08755|2e-19|45.7|94/102|YccV-like| HM:PFM:NREP 1 HM:PFM:REP 6->102|PF08755|1.2e-40|48.5|97/100|YccV-like| RP:SCP:NREP 1 RP:SCP:REP 6->95|1vbvA1|2e-18|31.0|71/77|b.34.17.1| HM:SCP:REP 5->99|1vbvA1|6.8e-32|42.9|91/0|b.34.17.1|1/1|YccV-like| OP:NHOMO 80 OP:NHOMOORG 78 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-----111221111111111111111111-11111111111-11-11111111111-111111111111---------------1-----------------------------11111------------------------------------------------------------------------------------------------------------------------------------------1-------------------------1--1---------1------------------------------------11--------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 68 STR:RPRED 62.4 SQ:SECSTR #####ccccTTcEEEETTTccEEEEEEEEcccc###################cEEEEEEEcccccEEEEEEGGGEEEccccccTTcHHHHHH################# DISOP:02AL 1-5,106-110| PSIPRED ccccEEEEccccEEEEccccccEEEEcccHHHccccHHHHHcccccccccccccEEEEEEccccccHHHHHHHHccccccccccccccHHHHHHccccccEEcHHHccc //