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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87558.2
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  357/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:245 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->183 2di3B PDBj 9e-12 32.1 %
:RPS:PDB   12->237 1e2xA PDBj 5e-27 16.4 %
:RPS:SCOP  12->80 1e2xA1  a.4.5.6 * 5e-13 26.1 %
:RPS:SCOP  92->237 1e2xA2  a.78.1.1 * 1e-15 15.0 %
:HMM:SCOP  5->114 1v4rA1 a.4.5.6 * 2.6e-14 31.0 %
:RPS:PFM   17->77 PF00392 * GntR 4e-07 41.0 %
:RPS:PFM   107->229 PF07729 * FCD 4e-07 35.5 %
:HMM:PFM   107->230 PF07729 * FCD 8.1e-23 36.9 122/125  
:HMM:PFM   15->77 PF00392 * GntR 7.4e-19 39.7 63/64  
:BLT:SWISS 18->177 YIEP_ECOLI 3e-26 40.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87558.2 GT:GENE AAK87558.2 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1774345..1775082) GB:FROM 1774345 GB:TO 1775082 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK87558.2 GB:DB_XREF GI:159140196 LENGTH 245 SQ:AASEQ MLDAAIGFRKLRTNHAQVVHKLGLDIVSGTFKTGDILPGDADLMERLKVSRTVLREAMKTLTAKGMISPKARIGTRVTERESWNMFDSEVLLWHFEAGVSEEFLLHLYDIRQAFEPYGAGLAATRAKDTDIARLVAYANEMGNTAYSKEKRAIADMNFHVLITEMSGNPFMRTVGSLIKAALAGIFRMSNPEADPNEISDVSASHLRLVEAFRLRDEVAARHEMERLIENGRQQILEFTARNSRR GT:EXON 1|1-245:0| BL:SWS:NREP 1 BL:SWS:REP 18->177|YIEP_ECOLI|3e-26|40.0|160/230| BL:PDB:NREP 1 BL:PDB:REP 15->183|2di3B|9e-12|32.1|162/230| RP:PDB:NREP 1 RP:PDB:REP 12->237|1e2xA|5e-27|16.4|220/222| RP:PFM:NREP 2 RP:PFM:REP 17->77|PF00392|4e-07|41.0|61/64|GntR| RP:PFM:REP 107->229|PF07729|4e-07|35.5|121/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 107->230|PF07729|8.1e-23|36.9|122/125|FCD| HM:PFM:REP 15->77|PF00392|7.4e-19|39.7|63/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 12->80|1e2xA1|5e-13|26.1|69/73|a.4.5.6| RP:SCP:REP 92->237|1e2xA2|1e-15|15.0|140/149|a.78.1.1| HM:SCP:REP 5->114|1v4rA1|2.6e-14|31.0|100/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 818 OP:NHOMOORG 360 OP:PATTERN -------------------------------------------------------------------- 1---4121332---11-----1---4------1111-2241--2-12--1--345--1----21-1245211----------3--------------------------------------------------------------2-------------------------------------1-1-----111-----11-1-1-1215111-1--1121-1--11111112----------------------------------------------111-------------1-----------------------111--3-2511111111111-22-1112------11-55-11----3----------444------1-311--1-----22122222115------2-137--677254857477321-11-12133----------------1--------------------------------1--1-12223333334422224474333323327113211221-1111324253--1------------------------1-1--2----1-1--2211-------1-----------------------------1222-13-1-13231--223311-1311----1--------231222-3223333333-232333333323333333322221--15253535554535335612133221-222222222222--------------1-31---1-1-------1-3322211---3222222456343461453------------12111112121211----------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 99.6 SQ:SECSTR HHHHccccccGccHHHHHHHHHHHHHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGGHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTTTcHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHHHHHHHHHHH# DISOP:02AL 1-15,238-246| PSIPRED cccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccc //