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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87625.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:TTCA_AGRT5   RecName: Full=tRNA 2-thiocytidine biosynthesis protein ttcA;

Homologs  Archaea  17/68 : Bacteria  452/915 : Eukaryota  29/199 : Viruses  0/175   --->[See Alignment]
c.26.2
:311 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   158->230 1wy5A PDBj 1e-05 34.3 %
:RPS:PDB   23->306 3dlaB PDBj 8e-24 13.1 %
:RPS:SCOP  65->268 1jgtA1  c.26.2.1 * 4e-24 14.2 %
:HMM:SCOP  46->266 1wy5A1 c.26.2.5 * 2.9e-50 33.3 %
:RPS:PFM   71->238 PF01171 * ATP_bind_3 4e-20 37.9 %
:HMM:PFM   72->252 PF01171 * ATP_bind_3 1.6e-17 30.6 170/182  
:BLT:SWISS 1->311 TTCA_AGRT5 e-168 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87625.2 GT:GENE AAK87625.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1837691..1838626) GB:FROM 1837691 GB:TO 1838626 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87625.2 GB:DB_XREF GI:159140228 LENGTH 311 SQ:AASEQ MNILTKIDDFVDQAGADKVGADHGPSEENGSSHPLFDNAPRSVSFNKLRKRLLRNVRQAFEDFGMLNGQKRWLVGLSGGKDSYGLLALLLDLKWRGLLPVELVACNLDQGQPNFPKHVLPEYLAKIGVAHRIEYRDTYSIVKEKVPSGGTYCSLCSRLRRGNLYRIAREEGCDALLLGHHREDILETFFMNFFHGGRLAGMPAKLLNDEGDLMVMRPLAYCAEEDMAKFAAAMEFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDVMLRALAHVNPSHLLDPKLFDFSALAVTGASPEERREASPP GT:EXON 1|1-311:0| SW:ID TTCA_AGRT5 SW:DE RecName: Full=tRNA 2-thiocytidine biosynthesis protein ttcA; SW:GN Name=ttcA; OrderedLocusNames=Atu1858; ORFNames=AGR_C_3410; SW:KW ATP-binding; Complete proteome; Cytoplasm; Nucleotide-binding;tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->311|TTCA_AGRT5|e-168|100.0|311/311| GO:SWS:NREP 4 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 46->55|nklrkrllrn| SEG 85->98|llallldlkwrgll| BL:PDB:NREP 1 BL:PDB:REP 158->230|1wy5A|1e-05|34.3|70/311| RP:PDB:NREP 1 RP:PDB:REP 23->306|3dlaB|8e-24|13.1|260/649| RP:PFM:NREP 1 RP:PFM:REP 71->238|PF01171|4e-20|37.9|161/185|ATP_bind_3| HM:PFM:NREP 1 HM:PFM:REP 72->252|PF01171|1.6e-17|30.6|170/182|ATP_bind_3| RP:SCP:NREP 1 RP:SCP:REP 65->268|1jgtA1|4e-24|14.2|197/290|c.26.2.1| HM:SCP:REP 46->266|1wy5A1|2.9e-50|33.3|213/0|c.26.2.5|1/1|Adenine nucleotide alpha hydrolases-like| OP:NHOMO 550 OP:NHOMOORG 498 OP:PATTERN ------1----------------11----1111----------1----11111--1----1-----11 --1-------------------------------------------------------------------------------------1111-1------------1---111111111111111---------------------1--1---------------------------------111-----------------------------------------------------------------------------------------------------------------------------------------111-133333332321211222221111-22-1--11111---1111-12-------111-1-------------11111111111---------11--111111111111--11-1-11111111---------------------------------------------------1111111111111111111111111111111111111111111111111111111111111111111111111111111211111-11111111111111111111111111111111111111111111111111111111211111111111111111--111-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---1111111111111111111111111-1111111111111111111111111111111112221222221111111111111111111111111111111----------------1--------------------1------------------- ---1112----1------------------------------------------------------------------------------------1---------1-112---------------------------------------------------1211----12211----611------3---211-112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 91.3 SQ:SECSTR ######################cccccccccccccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHTTccGGGEEEEEcccHHHHHHHHHHTcEEEEcccHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHTEEEEEcccHHHHHHTcccccccTTHHHHTccHHHHTccTTcccEEccTTccHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHcccTTcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccTTccccccGGGc##### DISOP:02AL 1-3,301-312| PSIPRED ccccccccccccHHHHHHHHcccccccccHHccHHHccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHccccEEEEEEEcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccc //