[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87644.1
DDBJ      :             ABC transporter, substrate binding protein (amino acid)
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  671/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->256 1hslA PDBj 1e-47 42.8 %
:RPS:PDB   27->254 3delB PDBj 5e-47 23.7 %
:RPS:SCOP  29->253 1gggA  c.94.1.1 * 7e-49 32.0 %
:HMM:SCOP  1->255 2a5sA1 c.94.1.1 * 2e-74 40.6 %
:RPS:PFM   30->251 PF00497 * SBP_bac_3 4e-35 40.5 %
:HMM:PFM   29->251 PF00497 * SBP_bac_3 3.2e-73 39.0 218/225  
:BLT:SWISS 28->256 HISJ_SALTY 4e-47 42.8 %
:PROS 51->64|PS01039|SBP_BACTERIAL_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87644.1 GT:GENE AAK87644.1 GT:PRODUCT ABC transporter, substrate binding protein (amino acid) GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1860027..1860800 GB:FROM 1860027 GB:TO 1860800 GB:DIRECTION + GB:PRODUCT ABC transporter, substrate binding protein (amino acid) GB:PROTEIN_ID AAK87644.1 GB:DB_XREF GI:15156996 LENGTH 257 SQ:AASEQ MPISTRLLAAVSIAAISLLSGAALAQDKIVIGTEGAYPPFNNLEADGTLTGFDIDIAKALCEQMKAECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIAVPKDSPIKSIDDLKGKSLGAQGSTTHSNYAEKHFPDADVKMYPTADEYKLDIANGRIDAVIDDIVVLSEWLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAGIRASGKYQEINKKYFDFDVYGD GT:EXON 1|1-257:0| BL:SWS:NREP 1 BL:SWS:REP 28->256|HISJ_SALTY|4e-47|42.8|229/260| PROS 51->64|PS01039|SBP_BACTERIAL_3|PDOC00798| SEG 7->25|llaavsiaaisllsgaala| BL:PDB:NREP 1 BL:PDB:REP 28->256|1hslA|1e-47|42.8|229/238| RP:PDB:NREP 1 RP:PDB:REP 27->254|3delB|5e-47|23.7|224/232| RP:PFM:NREP 1 RP:PFM:REP 30->251|PF00497|4e-35|40.5|215/222|SBP_bac_3| HM:PFM:NREP 1 HM:PFM:REP 29->251|PF00497|3.2e-73|39.0|218/225|SBP_bac_3| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00497|IPR001638| GO:PFM GO:0006810|"GO:transport"|PF00497|IPR001638| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF00497|IPR001638| RP:SCP:NREP 1 RP:SCP:REP 29->253|1gggA|7e-49|32.0|219/220|c.94.1.1| HM:SCP:REP 1->255|2a5sA1|2e-74|40.6|249/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 3247 OP:NHOMOORG 705 OP:PATTERN 11---1----------1-2222112--11-1111----7699211113----1----1------1--- ----2311----1-22211-16--281111116444359C12223-22111-546213----2-6334352744454421211--------------------------111111112212222-----1--4---111121111-1-14--21111-------1-1225-------------2441111--263444447544554453232564453225454333333A422222222222222222222564787875566666883645843337777555488767978877786665566666665487CBB7778135594535555232333323331322132-3177-5121-211111128---11111322322734111111116764637767J-118117154C21OGGGGHDHFJEHC4---12943341221111111112211-22----------11---------------1-2-----4866BKNNOOK87887FFGL888869MFO3671--4672253245C98C-13----743322222----2114A2567845977845156-41-132-31--4-6436444443212222222-23----776-3-----7-1111--11111211-11-2-4-1--------77CE5886665664666-6666666566666566558FHDDB4428777788888888877C665656631867777776777--3-111116666--36833343422222222144444-5254-1A99A8FCF778673989----------44464444444533-----------------7--------------2-3-------------------------121-113211-11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1--1-----------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 90.3 SQ:SECSTR #########################ccEEEEEEccccTTTcEEcTTccEEcHHHHHHHHHHHHHTcEEEEEEccGGGHHHHHHTTcccEEcccccccHHHHTTEEEEEEEEEEEcEEEEEEccccccccGGGcccEEEETTcHHHHHHHHHcTTccEEEEccHHHHHHHHHTTcccEEEEcHHHHHHHGGGcTTEEEEEHTEEEccGGGcEEEEEEEEETTcHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGcEEE DISOP:02AL 257-258| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEcccccEEEEHHHHHHHHHHHHccEEEEEEccHHHHHHHHHcccccEEEccccccHHHHHHHHHcccEEEccEEEEEEcccccccHHHHcccEEEEEcccHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEcHHHHHHHHHHcccccEEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccc //