[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87666.2
DDBJ      :             transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  355/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.4.5c.124.1
:311 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->307 2w48A PDBj 5e-30 29.2 %
:RPS:PDB   12->44 1bibA PDBj 2e-07 15.2 %
:RPS:PDB   56->307 3efbD PDBj 1e-28 25.5 %
:RPS:SCOP  4->44 1k78A1  a.4.1.5 * 7e-07 22.0 %
:RPS:SCOP  16->54 1e2xA1  a.4.5.6 * 1e-04 16.2 %
:RPS:SCOP  56->310 2gnpA1  c.124.1.8 * 4e-62 23.8 %
:HMM:SCOP  1->88 1pdnC_ a.4.1.5 * 6.3e-05 30.2 %
:RPS:PFM   16->43 PF01047 * MarR 3e-04 50.0 %
:RPS:PFM   56->307 PF04198 * Sugar-bind 4e-48 43.7 %
:HMM:PFM   54->307 PF04198 * Sugar-bind 4.3e-69 40.2 249/255  
:HMM:PFM   14->44 PF01047 * MarR 5.1e-07 35.5 31/59  
:BLT:SWISS 6->307 DEOR_BACSU 8e-39 32.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87666.2 GT:GENE AAK87666.2 GT:PRODUCT transcriptional regulator GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1881707..1882642 GB:FROM 1881707 GB:TO 1882642 GB:DIRECTION + GB:PRODUCT transcriptional regulator GB:PROTEIN_ID AAK87666.2 GB:DB_XREF GI:159140250 LENGTH 311 SQ:AASEQ MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQLRERFDLPEAIVVDCSEDRDGAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVENIHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTEAEPKLLPVPGVATSREAKLLMLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLRFFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDKFTAERLVGQET GT:EXON 1|1-311:0| BL:SWS:NREP 1 BL:SWS:REP 6->307|DEOR_BACSU|8e-39|32.9|298/313| BL:PDB:NREP 1 BL:PDB:REP 1->307|2w48A|5e-30|29.2|298/308| RP:PDB:NREP 2 RP:PDB:REP 12->44|1bibA|2e-07|15.2|33/294| RP:PDB:REP 56->307|3efbD|1e-28|25.5|235/241| RP:PFM:NREP 2 RP:PFM:REP 16->43|PF01047|3e-04|50.0|28/59|MarR| RP:PFM:REP 56->307|PF04198|4e-48|43.7|247/254|Sugar-bind| HM:PFM:NREP 2 HM:PFM:REP 54->307|PF04198|4.3e-69|40.2|249/255|Sugar-bind| HM:PFM:REP 14->44|PF01047|5.1e-07|35.5|31/59|MarR| GO:PFM:NREP 5 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| GO:PFM GO:0030246|"GO:carbohydrate binding"|PF04198|IPR007324| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF04198|IPR007324| RP:SCP:NREP 3 RP:SCP:REP 4->44|1k78A1|7e-07|22.0|41/63|a.4.1.5| RP:SCP:REP 16->54|1e2xA1|1e-04|16.2|37/73|a.4.5.6| RP:SCP:REP 56->310|2gnpA1|4e-62|23.8|252/262|c.124.1.8| HM:SCP:REP 1->88|1pdnC_|6.3e-05|30.2|86/0|a.4.1.5|1/1|Homeodomain-like| OP:NHOMO 639 OP:NHOMOORG 356 OP:PATTERN -------------------------------------------------------------------- -----11-----1------------5-------333-211---1332-11111111-1-----3--1111-------------------------------------------------------------------11--------------------------------------------111------2133333333133333332334233311111113333331221111111111111111111-122-121-1-2311-11111--1--11111111--111111111111111111111111111---111112111333332312112--1212-2-----------1-111--1121---------------1-122--------11221221127---------15--844364487398-----3-1222231---------2------2----------------------------------------111111122221111222211111--------11----1---14-----------------------------1-1-111-----------------------------------------------31----111------1-------------------------1-1-11-2221211111-2221221111223--2--6554221-11-11111121111111-111222---345555535555----------------2----21----1--112----------1--------1------1-1----------11111111111111-------------------------------------------------------------1----2------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 310 STR:RPRED 99.7 SQ:SECSTR HHHHHHHccccccccHHHHHHHHTccHHHHHHHHHHcHHHHHHHEEETHHHHHHHHHHHHHHHHHTccEEEEEccccHcHHHHHHHHHHHHHHHHHHHccTTcEEEEccccHHHHHHHHTccccccccccEEEEcccccTTcccGGcHHHHHHHHHHHTTcEEcccccccccccHHHHHHHTTcHHHHHHHHHHHTccEEEEEcccccHHHHHTTTcHHHHHHHHHHHHHTTccEEETTEEEcTTcccccTTTccccccHHHTTcGGcccEEEEEccTTcHHHHHHHHHHTcccEEEEEHHHHHHHHTcc# DISOP:02AL 310-312| PSIPRED cHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHcHHHHHHHHHHHHccEEEEEcccccccccHHHccccccHHHHHHHHHcccEEEEEEcEEcccccEEcccccccEEcccHHHHHccccEEEEEccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHc //