[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87714.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  34/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.6
:361 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   295->348 3cloA PDBj 2e-07 29.6 %
:RPS:SCOP  288->348 1yioA1  a.4.6.2 * 4e-08 27.9 %
:HMM:SCOP  273->359 1p4wA_ a.4.6.2 * 5.3e-12 28.7 %
:RPS:PFM   69->183 PF10060 * DUF2298 4e-04 29.5 %
:HMM:PFM   294->347 PF00196 * GerE 4.7e-10 29.6 54/58  
:BLT:SWISS 254->308 DICER_MOUSE 5e-04 32.7 %
:BLT:SWISS 295->348 MOAR_KLEAE 1e-04 37.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87714.1 GT:GENE AAK87714.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1921606..1922691 GB:FROM 1921606 GB:TO 1922691 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87714.1 GB:DB_XREF GI:15157077 LENGTH 361 SQ:AASEQ MNTISSADIIDDIYEAALFPDRWAKVIATIGHRLDFWGGALTWGKGEEESWLYTPNFQELMQAFMEGGWNRRNERLTRAIREGQFSFVQDFDVFTHDEWAGLPIVRDFLMPRGLGYGVATQIAPPDHPEMTVLFERKLESGVIGPETMAALAGLRPHIARSLALATRLQRQKADAMTLGLNVIGAPAAVLQASGRILSANDLFLSLQKSISTRARDRIVISDERTNRLLYKALAWHAVGSFPLPSGEDGACILHVIPLRRNALDLSPNGSAIVLISQPMGTIADAGTLLKGLYDLTKGEARVALEIMKGLSLPAVARQLQISHETVRSNAKSIYAKTGSTGQADLVRRLSVLTRYNIREQG GT:EXON 1|1-361:0| BL:SWS:NREP 2 BL:SWS:REP 254->308|DICER_MOUSE|5e-04|32.7|55/1916| BL:SWS:REP 295->348|MOAR_KLEAE|1e-04|37.0|54/227| RP:PDB:NREP 1 RP:PDB:REP 295->348|3cloA|2e-07|29.6|54/249| RP:PFM:NREP 1 RP:PFM:REP 69->183|PF10060|4e-04|29.5|112/476|DUF2298| HM:PFM:NREP 1 HM:PFM:REP 294->347|PF00196|4.7e-10|29.6|54/58|GerE| RP:SCP:NREP 1 RP:SCP:REP 288->348|1yioA1|4e-08|27.9|61/70|a.4.6.2| HM:SCP:REP 273->359|1p4wA_|5.3e-12|28.7|87/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 48 OP:NHOMOORG 35 OP:PATTERN -------------------------------------------------------------------- 1------------------------1-------111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-1------1-------------221112-111--1111--------1--------------------------------------------------------------1--1-------11-1--------------2--432----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--2--------------------------2------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 31.0 SQ:SECSTR #####################################################################################################################################################################################################################################HHHHHHTcccHHHHHHHHHHHHHHHHHHHHGGGcc###HHHHHHHHHHHHHHHHHccTTT####TccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccHHHHHHH############# DISOP:02AL 138-144, 280-287, 358-361| PSIPRED cccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEccccHHHHHHHHHHccHHccccccHHHHcccccEEEcHHcccHHHHHHHHHHHHHHHHccHHHHHEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHccccccEEccccccccEEEEEEEcccHHHHcccccEEEEEEEccccccccHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEcc //