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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87764.1
DDBJ      :             GGDEF family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  654/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
d.58.29
:579 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   413->568 3ignA PDBj 2e-22 36.8 %
:RPS:PDB   379->547 3btaA PDBj 2e-38 9.5 %
:RPS:SCOP  416->568 1w25A3  d.58.29.2 * 8e-33 34.2 %
:HMM:SCOP  416->570 1w25A3 d.58.29.2 * 3.2e-48 42.2 %
:RPS:PFM   414->566 PF00990 * GGDEF 6e-23 40.8 %
:HMM:PFM   412->567 PF00990 * GGDEF 2.9e-46 40.4 156/161  
:BLT:SWISS 396->571 YEDQ_SHIDS 4e-25 36.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87764.1 GT:GENE AAK87764.1 GT:PRODUCT GGDEF family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1970408..1972147 GB:FROM 1970408 GB:TO 1972147 GB:DIRECTION + GB:PRODUCT GGDEF family protein GB:PROTEIN_ID AAK87764.1 GB:DB_XREF GI:15157134 LENGTH 579 SQ:AASEQ MRASIQKIQLTGTIVIAVSAILLATLAALPSVSNYLRYRTNAQQLNRFETALQSAWLVSAERGPANNLMAATSADASLVERLAVARKATDDKLSQVETSFAEEIKAQPRLAKSLAETRQKLAQSREAVDAVAALPAEARSYSAMANAIQSMFTAADSVNLLRGKAARAIITKTPDVAIDIAMTGTAGVMRDRIGRLGSYVVMSLQANRQDRLSYRAKFDTEMQSVMLVKSSLWNYTAAYLSTPRLDAAFRDFDTYYFGQSLRYAQNTIAIVVPSALPSIRDFSENYIQGMRSSDQLRDLILAETRARIEKNKQQALIYGLASLFLALIAVMVLLRLTSVYKTALFQPMQSVLAQISAIAAGDLSEAQRQTGVAPEVTKMFQELDFLREQLRQKGEMEEQQRALSEQLRTLSETDALTGVFNRRALEKSVRAILSGDEDYQSLGVMIIDIDHFKSINDRYGHAMGDLALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTFDEQTGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRVWATYFPKVANG GT:EXON 1|1-579:0| BL:SWS:NREP 1 BL:SWS:REP 396->571|YEDQ_SHIDS|4e-25|36.4|176/564| TM:NTM 2 TM:REGION 11->33| TM:REGION 315->337| SEG 126->138|eavdavaalpaea| SEG 503->509|atatata| BL:PDB:NREP 1 BL:PDB:REP 413->568|3ignA|2e-22|36.8|152/161| RP:PDB:NREP 1 RP:PDB:REP 379->547|3btaA|2e-38|9.5|168/1277| RP:PFM:NREP 1 RP:PFM:REP 414->566|PF00990|6e-23|40.8|152/160|GGDEF| HM:PFM:NREP 1 HM:PFM:REP 412->567|PF00990|2.9e-46|40.4|156/161|GGDEF| RP:SCP:NREP 1 RP:SCP:REP 416->568|1w25A3|8e-33|34.2|152/162|d.58.29.2| HM:SCP:REP 416->570|1w25A3|3.2e-48|42.2|154/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8398 OP:NHOMOORG 663 OP:PATTERN -------------------------------------------------------------------- GA359---111---26311-1I22-111111-B6566I759AAQk-------635-----773-A2G5653---------C168BJ66--------------------1----------------11111111171BCC9911194jTQFKJ223EE---2--7H9-DDI3------------R8D439815A2666665672776777-23333677365C2FG333333AD-1111111111111111111-121--1----3311-1--1111-----------------------------------------------4AA7K888888897B4H665455858--5AB5AIHGD775BB522452--C396993-----26YQS98IVPKTV3477367567H-URKPPARNBU51KQQNWWNXZcFDSE8C8292AD89774--------BCC3-f9P11111111111111111111111-11111-87F83BB952IFGFHGD7776DDSX888827JSPFNGP-3MKIVIYKNX12lA7RQUUIWYaM-------36FJgo4IRGKIMPAoRLKN1KHLaGOGXQ6666B565F776--111-----------TBKNB32YVHZdWpJlTemhijgimcifeWdbbWWvp---AWDg------BGJC3M7EEEDEDDDFC-CEDFE9ADEDDCDDEEDDFEHECE--18489888888788897C786547A--E34444433444---S-1-1-FHGHFAlEm---------------8788829-1-GaQPPPWXYXbWWUUQRTX-----2---UPUURVVUUTaXappMOKPKPMEFH1111--Z27766DD-1111111618-------------------------B74C979777-1- ----1------------------------------------------------------------------------------------------1--------------------------------------------------------------2----4---------52----------1--8-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 49.1 SQ:SECSTR #################################################################################################################################################################################################################################################################################################ccccccHHHHHHTTccccEEEEcHHHHHHcHHHHHHHHHHTTccHHHTTccEEEEccccHHHHHHHHHHHTHHHHHHHHTTcccccEEEGGGccccccccccccccccccTTTTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHcccEcccTTccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTcEEEccccccccTTTccccccEEEEccccEEcEEccccGGGTcTTcccccEEccHHHHHHHHHHHHHHHHHHHHTTTcccEcEEEE###### DISOP:02AL 1-6, 577-579| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccc //