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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87880.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  310/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.20.1b.160.1
:460 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   345->456 1y7mA PDBj 7e-12 45.3 %
:RPS:PDB   181->442 3bkhA PDBj 4e-04 13.4 %
:RPS:SCOP  181->245 1lbuA1  a.20.1.1 * 3e-08 16.9 %
:RPS:SCOP  327->457 1zatA1  b.160.1.1 * 2e-20 23.7 %
:HMM:SCOP  167->247 1lbuA1 a.20.1.1 * 1.4e-05 23.5 %
:HMM:SCOP  322->459 1zatA1 b.160.1.1 * 5.2e-29 39.8 %
:RPS:PFM   342->456 PF03734 * YkuD 3e-08 38.9 %
:HMM:PFM   333->455 PF03734 * YkuD 1.5e-20 30.1 103/116  
:HMM:PFM   182->220 PF01471 * PG_binding_1 1.4e-05 28.2 39/57  
:BLT:SWISS 281->456 YKUD_BACSK 3e-17 35.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87880.2 GT:GENE AAK87880.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2098161..2099543 GB:FROM 2098161 GB:TO 2099543 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK87880.2 GB:DB_XREF GI:159140339 LENGTH 460 SQ:AASEQ MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRDTMGRTVFYDRYGNLLATEMPSGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDYREYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAAVPQPEHLIERHTPVTTPVNRSRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRASGGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELNPGIDFTVPGTIIKVVNPGEAKKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTPSPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE GT:EXON 1|1-460:0| BL:SWS:NREP 1 BL:SWS:REP 281->456|YKUD_BACSK|3e-17|35.1|151/165| SEG 84->89|qqrqqq| BL:PDB:NREP 1 BL:PDB:REP 345->456|1y7mA|7e-12|45.3|86/161| RP:PDB:NREP 1 RP:PDB:REP 181->442|3bkhA|4e-04|13.4|239/260| RP:PFM:NREP 1 RP:PFM:REP 342->456|PF03734|3e-08|38.9|113/136|YkuD| HM:PFM:NREP 2 HM:PFM:REP 333->455|PF03734|1.5e-20|30.1|103/116|YkuD| HM:PFM:REP 182->220|PF01471|1.4e-05|28.2|39/57|PG_binding_1| RP:SCP:NREP 2 RP:SCP:REP 181->245|1lbuA1|3e-08|16.9|65/83|a.20.1.1| RP:SCP:REP 327->457|1zatA1|2e-20|23.7|114/126|b.160.1.1| HM:SCP:REP 167->247|1lbuA1|1.4e-05|23.5|81/83|a.20.1.1|1/1|PGBD-like| HM:SCP:REP 322->459|1zatA1|5.2e-29|39.8|123/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| OP:NHOMO 517 OP:NHOMOORG 310 OP:PATTERN -------------------------------------------------------------------- -12--------------------------------------121-----------------------------------------1-1----------------------------------------------------------1111111--11---223-1----12--------------------1121111111121112111-11111122221---------21-------------------------------------------------------------------------------------------1---1111111-1---11------1-------1112121-1---------1-1--1------111-1---1---11111111111-1111111114--1111222223221----1-11111-22----------------------------------------------111----------------------------------------------1------------2111111111-------------------222-2121122-2--11-------------------------11221-1------1111111-1111-1--1----11111------331-1314444444444-4444444444444444444222111-144344444444343442434444311--1-11111111----1111111112-1-----------------11111111231-11111111111111111-------------1----------1111111111----------------------------------------------------11111111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 55.4 SQ:SECSTR ####################################################################################################################################################################################ccHHHHHHHHHHHTTTcccccccccccHHHHHHHHHHHHHTTccccccccHHHHHHHHHHccccccGGGccccccccHHHHHHHHHHHHHHccc########HHHHHHHHHHHH###TTccccccTTccccTTTccHHHHHHHHHGTccccTTcGGGGcHHHHHHHHHHHHHHHHHGGGccccccHHHHHHHHHHcHHHHH##########HHTTccTTccHHHHcHHHHHHcHHHccTTcccccHTTHHHHHHHHHHHTTcHHHHHHHccTTcEE#### DISOP:02AL 1-1,144-159,173-186| PSIPRED cHHHHHHHHHHHHHHHHHHcccccccHHcccccccEEEEcccccccccccccccEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEccccccHHHHHHHHcccHHHHHHHccccccccccccEEEEcccccccccccEEEEEccccEEEEEEcccEEEEEEEEEcccccccccEEEEEEEEEEEcccccccHHHHHcccccccccccccccccccccEEEEEcccEEEEEccccccccccccccccccccHHHHHHHHHHcccccEEEEEc //