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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87892.2
DDBJ      :             transcriptional regulator, RpiR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  286/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1a.4.5c.80.1
:292 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->237 2cvpA PDBj 5e-23 9.7 %
:RPS:SCOP  10->85 2o3fA1  a.4.1.20 * 1e-15 25.0 %
:RPS:SCOP  100->273 1jeoA  c.80.1.3 * 1e-16 16.3 %
:HMM:SCOP  19->79 1on2A1 a.4.5.24 * 0.0002 32.8 %
:HMM:SCOP  100->279 1m3sA_ c.80.1.3 * 2.8e-17 19.7 %
:RPS:PFM   12->87 PF01418 * HTH_6 6e-13 42.1 %
:HMM:PFM   134->259 PF01380 * SIS 7e-28 24.8 125/131  
:HMM:PFM   10->82 PF01418 * HTH_6 2.2e-18 37.0 73/107  
:BLT:SWISS 12->257 HEXR_ECOLI 3e-13 26.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87892.2 GT:GENE AAK87892.2 GT:PRODUCT transcriptional regulator, RpiR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2110492..2111370 GB:FROM 2110492 GB:TO 2111370 GB:DIRECTION + GB:PRODUCT transcriptional regulator, RpiR family GB:PROTEIN_ID AAK87892.2 GB:DB_XREF GI:159140346 LENGTH 292 SQ:AASEQ MRSTTATVSDVIHAHYDALTRSEKRLAESLLGNYPVSGLGSITTIAENAGVSTPTVARMVQKLGYKGYPEFQAHLHQELEATISGPVAKHDRWATNAPGLHILNRFADAITGNLRDTLGDLDTAVFDNAARLLSDRKRSIYFVGGRITGAIAEYFFTHMQVIRPKTTLMSSNSSAWPQYMLNMSAGDVLVIFDIRRYEHDMTTLAEVAKANGVQIILFTDQWTSPVARHALHTFRVRIEAPSAWDSSVVTLFVVEALIEAVQNGTWDETKERMNALEGLFEQTRLFRRPERT GT:EXON 1|1-292:0| BL:SWS:NREP 1 BL:SWS:REP 12->257|HEXR_ECOLI|3e-13|26.5|234/289| RP:PDB:NREP 1 RP:PDB:REP 1->237|2cvpA|5e-23|9.7|226/557| RP:PFM:NREP 1 RP:PFM:REP 12->87|PF01418|6e-13|42.1|76/102|HTH_6| HM:PFM:NREP 2 HM:PFM:REP 134->259|PF01380|7e-28|24.8|125/131|SIS| HM:PFM:REP 10->82|PF01418|2.2e-18|37.0|73/107|HTH_6| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01418|IPR000281| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01418|IPR000281| RP:SCP:NREP 2 RP:SCP:REP 10->85|2o3fA1|1e-15|25.0|76/83|a.4.1.20| RP:SCP:REP 100->273|1jeoA|1e-16|16.3|166/177|c.80.1.3| HM:SCP:REP 19->79|1on2A1|0.0002|32.8|61/0|a.4.5.24|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 100->279|1m3sA_|2.8e-17|19.7|173/0|c.80.1.3|1/1|SIS domain| OP:NHOMO 401 OP:NHOMOORG 286 OP:PATTERN -------------------------------------------------------------------- -1-11--------------------1------1111-------------1-------------1-11-11-------------------------------------------------------------------------------------------------------------------------------------------12--1----1---11-------21------------------------------1-----1-----------------------------------------------------12112111111121111111111-11---11------------1131-------11------1---1--------22222221225--------121--2222111211341--1-1-31111213--------1-----------------------------------------11-1--1221211111111232222122342312--2231-2--1-2134-------1-------------------------------------------------------------------------1112--1-1-11211111111111111111-------------41122111111111111-1111112111111111111232221122111111112112111211-11112-322222222222---------------122111-2---11-1221----------2-2222131--1111--------------11211111111112--------------------------------------------------------------1------1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 289 STR:RPRED 99.0 SQ:SECSTR HHHHHHHcTTHHHHTEEEEccccEEEEEcTTccccHHHHHHHHHHHHHTTHHHHHHHHHTTccccTTTTccccHHHHTcTTccccEETTEEcTTGGGTGGGGcHHHHHHHHHHHHHHHHHHHTTccccTTcccccEEEEEccGGGTHHHHHHHHHTGGGGTTccEEEEEccccHHHHHHHHTcTTcEEEEEEccccccHHHHHHHHHHHHHHHHHHccGGGGGGTEEEEEccHHHHHEEccTTccTTccccTTTTHHHHHHTTccHHHHHHHHHHHHHHTccccGGGcH### DISOP:02AL 1-5,8-10,87-96,288-293| PSIPRED ccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccHHHHHccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccc //