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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87910.1
DDBJ      :             bacteriophytochrome protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  148/915 : Eukaryota  50/199 : Viruses  1/175   --->[See Alignment]
c.23.1d.110.2d.110.3d.122.1
:850 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->478 3c2wC PDBj 2e-79 39.5 %
:BLT:PDB   731->844 1sd5A PDBj 1e-09 28.9 %
:RPS:PDB   130->478 3c2wD PDBj 2e-41 38.4 %
:RPS:PDB   503->739 2bu6A PDBj 3e-05 14.9 %
:RPS:PDB   731->840 3c97A PDBj 6e-12 19.3 %
:RPS:SCOP  8->118 1ztuA2  d.110.3.9 * 1e-22 33.7 %
:RPS:SCOP  143->305 2k2nA1  d.110.2.1 * 2e-48 33.7 %
:RPS:SCOP  324->478 3c2wA2  d.110.2.4 * 2e-32 32.6 %
:RPS:SCOP  576->702 1r62A  d.122.1.3 * 9e-06 16.3 %
:RPS:SCOP  729->838 1a0oA  c.23.1.1 * 2e-16 24.5 %
:HMM:SCOP  141->318 1mc0A2 d.110.2.1 * 5.9e-14 20.4 %
:HMM:SCOP  572->701 1l0oA_ d.122.1.3 * 0.00056 24.4 %
:HMM:SCOP  729->845 1s8nA_ c.23.1.1 * 1.2e-19 30.8 %
:RPS:PFM   13->118 PF08446 * PAS_2 4e-09 44.0 %
:RPS:PFM   142->283 PF01590 * GAF 4e-11 36.4 %
:RPS:PFM   340->478 PF00360 * Phytochrome 2e-19 34.1 %
:RPS:PFM   520->599 PF07536 * HWE_HK 6e-16 45.0 %
:RPS:PFM   734->840 PF00072 * Response_reg 2e-07 30.2 %
:HMM:PFM   323->499 PF00360 * Phytochrome 3.7e-57 39.0 177/183  
:HMM:PFM   13->118 PF08446 * PAS_2 4.5e-28 34.3 105/108  
:HMM:PFM   142->304 PF01590 * GAF 3.1e-26 26.7 150/154  
:HMM:PFM   520->600 PF07536 * HWE_HK 7.6e-24 45.7 81/83  
:HMM:PFM   734->838 PF00072 * Response_reg 4.6e-13 25.7 105/112  
:BLT:SWISS 8->539 BPHY_PSEAE 6e-79 36.9 %
:BLT:SWISS 732->837 LYTT_BACCR 1e-09 34.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87910.1 GT:GENE AAK87910.1 GT:PRODUCT bacteriophytochrome protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2130798..2133350 GB:FROM 2130798 GB:TO 2133350 GB:DIRECTION + GB:PRODUCT bacteriophytochrome protein GB:PROTEIN_ID AAK87910.1 GB:DB_XREF GI:15157306 LENGTH 850 SQ:AASEQ MASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGRTAEDVLGKKLVHDLRNALTVTGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSGSDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYDRVMIYRFQEDGAGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAHLRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFFSMHLQVLKQKRRLDTINHAHAALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAIPEAEIYAGTAAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEADREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYVTALKGRIQALSFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWDVNENRDCEISWRETLLTTLPAPSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETLPQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVAILDINLGSDTSIPVARELHRRGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGIGVLVGDTERV GT:EXON 1|1-850:0| BL:SWS:NREP 2 BL:SWS:REP 8->539|BPHY_PSEAE|6e-79|36.9|501/728| BL:SWS:REP 732->837|LYTT_BACCR|1e-09|34.0|106/246| SEG 45->59|encgellglegdlng| SEG 479->496|eadreiaeaarialveva| BL:PDB:NREP 2 BL:PDB:REP 8->478|3c2wC|2e-79|39.5|446/482| BL:PDB:REP 731->844|1sd5A|1e-09|28.9|114/188| RP:PDB:NREP 3 RP:PDB:REP 130->478|3c2wD|2e-41|38.4|333/478| RP:PDB:REP 503->739|2bu6A|3e-05|14.9|222/353| RP:PDB:REP 731->840|3c97A|6e-12|19.3|109/120| RP:PFM:NREP 5 RP:PFM:REP 13->118|PF08446|4e-09|44.0|91/108|PAS_2| RP:PFM:REP 142->283|PF01590|4e-11|36.4|121/143|GAF| RP:PFM:REP 340->478|PF00360|2e-19|34.1|138/179|Phytochrome| RP:PFM:REP 520->599|PF07536|6e-16|45.0|80/83|HWE_HK| RP:PFM:REP 734->840|PF00072|2e-07|30.2|106/111|Response_reg| HM:PFM:NREP 5 HM:PFM:REP 323->499|PF00360|3.7e-57|39.0|177/183|Phytochrome| HM:PFM:REP 13->118|PF08446|4.5e-28|34.3|105/108|PAS_2| HM:PFM:REP 142->304|PF01590|3.1e-26|26.7|150/154|GAF| HM:PFM:REP 520->600|PF07536|7.6e-24|45.7|81/83|HWE_HK| HM:PFM:REP 734->838|PF00072|4.6e-13|25.7|105/112|Response_reg| GO:PFM:NREP 12 GO:PFM GO:0007600|"GO:sensory perception"|PF08446|IPR013654| GO:PFM GO:0008020|"GO:G-protein coupled photoreceptor activity"|PF08446|IPR013654| GO:PFM GO:0018298|"GO:protein-chromophore linkage"|PF08446|IPR013654| GO:PFM GO:0045449|"GO:regulation of transcription"|PF08446|IPR013654| GO:PFM GO:0004872|"GO:receptor activity"|PF00360|IPR013515| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00360|IPR013515| GO:PFM GO:0007600|"GO:sensory perception"|PF00360|IPR013515| GO:PFM GO:0008020|"GO:G-protein coupled photoreceptor activity"|PF00360|IPR013515| GO:PFM GO:0018298|"GO:protein-chromophore linkage"|PF00360|IPR013515| GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| RP:SCP:NREP 5 RP:SCP:REP 8->118|1ztuA2|1e-22|33.7|104/124|d.110.3.9| RP:SCP:REP 143->305|2k2nA1|2e-48|33.7|163/170|d.110.2.1| RP:SCP:REP 324->478|3c2wA2|2e-32|32.6|141/173|d.110.2.4| RP:SCP:REP 576->702|1r62A|9e-06|16.3|123/136|d.122.1.3| RP:SCP:REP 729->838|1a0oA|2e-16|24.5|110/128|c.23.1.1| HM:SCP:REP 141->318|1mc0A2|5.9e-14|20.4|152/0|d.110.2.1|1/1|GAF domain-like| HM:SCP:REP 572->701|1l0oA_|0.00056|24.4|123/141|d.122.1.3|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 729->845|1s8nA_|1.2e-19|30.8|117/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 765 OP:NHOMOORG 201 OP:PATTERN -------------------------------------------------1--2--------------- 1--------------------1-------------------1--1-------------------1----1-----111---------------------1-2-11221-1--------------------------111-------224422111---------2--347-------------2-1--11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CBB81111166AKNB43G5A8722222222225-JEKIFCLR8B1-4AA9A688DBBB32-4--218635-1------------33-94------------------------------6743------------1------1----------------11---1--------------1--------------------------------------------1--------------------------------3----1-------1-----------------1----------------------------------------------------------------------------------------------------------------------------------------11112111-22221212------------------------3255555221--------------------------------------------------------------- --------------1112111111111-------------------23111111-11--222---------------------------1-1111-1111111----1----------------------------------------------------------------------1------7324151112---- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1- STR:NPRED 816 STR:RPRED 96.0 SQ:SECSTR #######ccTTTGGGccTTcccEEcTTEEEEEEEcTTccccEEETTHHHHccccccTTccccTTTTcHHHHHHHHHHHccccccEEcEEEEEEEEEETEEEEEEEETTEEEEEEEEccccccHHHHcTTHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEcTTccEEEEEEEEcTTccccTTcEEcTTcccHHHHHHHHHccEEEEccTTcccEEEEccccTTTcccccTTcccccccHHHHHHHHHHTccEEEEEEEEETTEEEEEEEEEEcccccccHHHHGGGGTHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHcccccHHHHHccccccHHHHccccEEEEEcTTccEEEETcccHHHHHHHHHTTcccccccEEEEccccccTccEEEEcccccEEEEEEEETTTTEEEEEEEccccccccccccccccccccccccTTcHHHHHHHHTTTcTTcccccc########################ccTTcTTTTHHHHHHHHHHHHHTTTHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccTTHHHHHHHHHHHHHHHcEEEEcccTTcccEEEEcHHHHHHHHHHHHHcEEEc###cTTccEEEEccccccccEEEEEEEccGGGTTcEEEEEccccccHHHHHHHHTccccTTHHHHHHHHHTTccccHHHHccEEEccccEETTEEccccccccccccEEEEEcccHHHHHHHHHHHTTTccEEEEEEccHHHHHHHHHHccccEEEEcTTcccccHHHHHHHHHHHHccccccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHccTTc DISOP:02AL 1-2, 502-526, 542-543, 545-547, 658-666, 849-850| PSIPRED cccccccccHHHHccccccccccccccEEEEEEEccccEEEEEcccHHHHHcccHHHccccHHHHcccHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEEcccccHHcccccccccccHHHHHHHHcccEEEEEEcccccccEEcccccccccEEEEccEEccccHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHccEEEEEEccEEEEEEccccHHHHHHHHHHHHHcccccEEEEccHHHHcccHHHHHHHHcEEEEEEEccccccEEEEcccccHHHEEcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccEEEEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEEEccccEEEEEEEEccccccccccccccccHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHccc //