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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87925.2
DDBJ      :             GGDEF family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  646/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.58.29
:379 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   218->373 1w25A PDBj 8e-25 41.7 %
:RPS:PDB   203->374 3breB PDBj 9e-38 35.5 %
:RPS:SCOP  226->374 1w25A3  d.58.29.2 * 7e-30 40.3 %
:HMM:SCOP  226->374 1w25A3 d.58.29.2 * 2.4e-49 46.3 %
:RPS:PFM   224->372 PF00990 * GGDEF 2e-30 47.0 %
:HMM:PFM   221->371 PF00990 * GGDEF 3.4e-44 47.7 151/161  
:HMM:PFM   112->140 PF01176 * eIF-1a 0.00018 37.9 29/65  
:BLT:SWISS 218->373 PLED_CAUCR 2e-24 41.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87925.2 GT:GENE AAK87925.2 GT:PRODUCT GGDEF family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2154605..2155744) GB:FROM 2154605 GB:TO 2155744 GB:DIRECTION - GB:PRODUCT GGDEF family protein GB:PROTEIN_ID AAK87925.2 GB:DB_XREF GI:159140363 LENGTH 379 SQ:AASEQ MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEWKILSPALWELGSVLFGIAGYALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAGNNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALGAITGVSGLISLAVMKSVLFPGYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMPAAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDAVAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADRALYRAKTEGRNCVREALAA GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 218->373|PLED_CAUCR|2e-24|41.7|156/454| TM:NTM 7 TM:REGION 6->28| TM:REGION 35->57| TM:REGION 66->88| TM:REGION 100->122| TM:REGION 124->145| TM:REGION 156->178| TM:REGION 191->213| SEG 133->146|aalaylggagvlfa| SEG 239->253|mpaapdpadaamlld| BL:PDB:NREP 1 BL:PDB:REP 218->373|1w25A|8e-25|41.7|156/454| RP:PDB:NREP 1 RP:PDB:REP 203->374|3breB|9e-38|35.5|172/328| RP:PFM:NREP 1 RP:PFM:REP 224->372|PF00990|2e-30|47.0|149/160|GGDEF| HM:PFM:NREP 2 HM:PFM:REP 221->371|PF00990|3.4e-44|47.7|151/161|GGDEF| HM:PFM:REP 112->140|PF01176|0.00018|37.9|29/65|eIF-1a| RP:SCP:NREP 1 RP:SCP:REP 226->374|1w25A3|7e-30|40.3|149/162|d.58.29.2| HM:SCP:REP 226->374|1w25A3|2.4e-49|46.3|149/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 7919 OP:NHOMOORG 654 OP:PATTERN -------------------------------------------------------------------- G9328---111---14211-1G22-111111-B4546A6498ASm-------635-----B83-A2G5453---------7168BJ66--------------------1----------------11111111151BBB9911194jRRCII223EE---2--7H8-CBI3------------M7C43981592777775671767676-33332777477C2EG333333AB11111111111111111111--2--------33-----11--1-----------------------------------------------2995E66666668574C344455448--77559FEGD67589521442--C385992-----26WQT96HYPITU3577367677H-WVJSR9NNBS51IPPPVVQWXbFDRC7DA2829B78774--------CBB3-fAQ11111111111111111111111-11111-66E92AA842HCEEHFD7776BBSX888826ISODNGO-3MLIUIaKNU12m98TQUTIUYZM-------36EKfo4IPGJINP9jRKIM1KILXGNFYP7776A555D676-11111----------TAHOA22ZTGaaWoIjUdpeegchmafddUeZcVTwm---CXFe------ADIB3K7BBBABAAAC9-9BACB68ABAAAAABBAADBFCDD---7388777777687886C6664348--D34444433444---Q-----DHEFEAjFm---------------7677726-1-GYONNNWVVVZWWTSQRUX-----2---VLPQOVUUUTTTTlkKLILIKIBCC1111--Y27755CC--111111515-------------------------7747778767-1- -----------------------------------------------------------------------------------------------1--------------------------------------------------------------2----4---------62----------1--8-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 194 STR:RPRED 51.2 SQ:SECSTR ####################################################################################################################################################################################cccTTccccEEEEEEETTTccHHHHHHHHHHHHHHHHHHHHHccTTTccccHHHHHHHHHHHHHHHHHHTccEETTHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTcEEEEccccEEEEEEETccHHHHHHHHHHHHHHHHTEccccTTEEccEEEEEEEEccccccccHHHHHHHHHHHHHHHHTTTcccEE##### DISOP:02AL 1-2,379-380| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHHccEEcccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEcccc //