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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87937.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  295/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->197 3hhgG PDBj 4e-11 26.0 %
:RPS:PDB   6->117 1b9nA PDBj 5e-14 13.5 %
:RPS:PDB   96->314 1al3A PDBj 2e-09 13.6 %
:RPS:SCOP  1->108 1b9mA1  a.4.5.8 * 5e-15 13.9 %
:RPS:SCOP  96->296 1utbA  c.94.1.1 * 2e-12 12.4 %
:HMM:SCOP  7->118 1b9mA1 a.4.5.8 * 5.4e-24 36.2 %
:HMM:SCOP  93->299 1uthA_ c.94.1.1 * 4.4e-34 28.5 %
:RPS:PFM   13->66 PF00126 * HTH_1 9e-09 50.0 %
:HMM:PFM   95->298 PF03466 * LysR_substrate 1.8e-32 27.4 197/209  
:HMM:PFM   12->67 PF00126 * HTH_1 8.6e-21 50.0 56/60  
:BLT:SWISS 15->266 Y1364_HAEIN 5e-12 21.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87937.1 GT:GENE AAK87937.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2166746..2167690 GB:FROM 2166746 GB:TO 2167690 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID AAK87937.1 GB:DB_XREF GI:15157339 LENGTH 314 SQ:AASEQ MTKSRDVSWDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAVGFPLFIRSPHGLMPTEAALALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIVALMQEVHPRLEIELSLSDTLEDLLRREADIAIRMTEPQQDAIVMRYIGNFRLGFHATRDYLAKAGIPKAMEELNEHRMVGFDRKTPFIRAAIQRMRSLDPDIPDIEDISFEIRADSNLAQLAMIRASAGIGVCQIGLARKDPRLVHVLPDIDIPLHTWVAMHENLKTSPRCRAVFSALVEGLKAHLKETDPNAPPKRR GT:EXON 1|1-314:0| BL:SWS:NREP 1 BL:SWS:REP 15->266|Y1364_HAEIN|5e-12|21.6|245/288| SEG 74->88|aenlaataaalmraa| SEG 126->143|leielslsdtledllrre| BL:PDB:NREP 1 BL:PDB:REP 15->197|3hhgG|4e-11|26.0|181/294| RP:PDB:NREP 2 RP:PDB:REP 6->117|1b9nA|5e-14|13.5|111/258| RP:PDB:REP 96->314|1al3A|2e-09|13.6|213/237| RP:PFM:NREP 1 RP:PFM:REP 13->66|PF00126|9e-09|50.0|54/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 95->298|PF03466|1.8e-32|27.4|197/209|LysR_substrate| HM:PFM:REP 12->67|PF00126|8.6e-21|50.0|56/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->108|1b9mA1|5e-15|13.9|108/122|a.4.5.8| RP:SCP:REP 96->296|1utbA|2e-12|12.4|194/214|c.94.1.1| HM:SCP:REP 7->118|1b9mA1|5.4e-24|36.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 93->299|1uthA_|4.4e-34|28.5|200/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 1096 OP:NHOMOORG 297 OP:PATTERN -------------------------------------------------------------------- --------------1------1---3------11111134-----11-----213-11----1---2----------------------------------------------------------------------11-1----11--111------------2------------------------------------------------------------------11-------------------------------------------------------------------------------------------------------------------------1---1----1---------1--311211111C48571144215144334333334-34A2384836319776586B9B69BB64455655556684344444434432212-----------------------------1-363-3222499ADCE525557775555514D774895-1A962-321D46371-52-11181--122-211--231---------------------1-222125-----------------------------2121-15-21-1---11121---3-22-44------1------2217-42-----------------------1------676321------------------9------------------------2-1---------521-1-5-4-112-1---4444413-124-876759B7756761455---------1321622222234334323133111--------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 314 STR:RPRED 100.0 SQ:SECSTR cHHHHEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcHHHHHHHHTcccTTccEEEHcccTTcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGcEGcTTccTTcEEEEEEcGGGcEEETccEcccEGGGccTcTTcEEEEccTTccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHHcccHHH DISOP:02AL 1-4, 88-93, 301-314| PSIPRED ccccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEcHHHccccEEEEEcccccccEEEEEEccccEEEEEcHHHHHcccccccHHHHccccEEEEEcccccccccccccccccccccEEEEccccEEEccHHHHHHHHHHcccEEEEccHHHHHccccEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccc //