[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK87968.2
DDBJ      :             GGDEF family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  653/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.1.33d.58.29
:694 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   256->413 3iclA PDBj 5e-18 32.1 %
:BLT:PDB   435->671 2r6oA PDBj 1e-44 43.5 %
:RPS:PDB   243->415 3breA PDBj 3e-37 28.9 %
:RPS:PDB   435->657 2basA PDBj 1e-64 21.6 %
:RPS:SCOP  258->414 1w25A3  d.58.29.2 * 2e-33 32.1 %
:RPS:SCOP  435->662 2basA1  c.1.33.1 * 3e-69 21.9 %
:HMM:SCOP  258->416 1w25A3 d.58.29.2 * 2.3e-51 40.5 %
:HMM:SCOP  428->672 2basA1 c.1.33.1 * 1.6e-83 47.8 %
:RPS:PFM   253->405 PF00990 * GGDEF 2e-33 47.7 %
:RPS:PFM   435->660 PF00563 * EAL 5e-73 55.8 %
:HMM:PFM   431->660 PF00563 * EAL 5e-72 44.1 227/236  
:HMM:PFM   254->406 PF00990 * GGDEF 9.3e-43 41.8 153/161  
:HMM:PFM   9->43 PF03707 * MHYT 0.0008 14.3 35/62  
:HMM:PFM   58->118 PF03707 * MHYT 1.1e-13 29.5 61/62  
:HMM:PFM   120->170 PF03707 * MHYT 1.7e-13 45.1 51/62  
:HMM:PFM   183->235 PF03707 * MHYT 2.7e-08 39.6 48/62  
:BLT:SWISS 236->666 Y091_CAUCR e-108 46.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87968.2 GT:GENE AAK87968.2 GT:PRODUCT GGDEF family protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2196345..2198429) GB:FROM 2196345 GB:TO 2198429 GB:DIRECTION - GB:PRODUCT GGDEF family protein GB:PROTEIN_ID AAK87968.2 GB:DB_XREF GI:159140380 LENGTH 694 SQ:AASEQ MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAAIWTTHFVAMLGYVAAGDVGYDPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILGLGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAIAVNRIARPLNRFCQYSAVAFLILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQSTQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDVHGHAAGDAVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQISKPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMYRAKSATSDTICFYDKSMDEAARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPIAEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAPERLELEITEGSIIADHRHALVTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREGCLQVQGFFFGKPGPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR GT:EXON 1|1-694:0| BL:SWS:NREP 1 BL:SWS:REP 236->666|Y091_CAUCR|e-108|46.6|431/809| TM:NTM 6 TM:REGION 17->37| TM:REGION 52->74| TM:REGION 84->106| TM:REGION 109->131| TM:REGION 156->178| TM:REGION 218->240| SEG 85->104|tglslliaittttagfgisa| SEG 114->125|aggtilglgiaa| SEG 217->232|gggaiavtllllalgl| SEG 420->432|aararnalaiamr| BL:PDB:NREP 2 BL:PDB:REP 256->413|3iclA|5e-18|32.1|156/159| BL:PDB:REP 435->671|2r6oA|1e-44|43.5|232/253| RP:PDB:NREP 2 RP:PDB:REP 243->415|3breA|3e-37|28.9|173/322| RP:PDB:REP 435->657|2basA|1e-64|21.6|218/393| RP:PFM:NREP 2 RP:PFM:REP 253->405|PF00990|2e-33|47.7|153/160|GGDEF| RP:PFM:REP 435->660|PF00563|5e-73|55.8|226/236|EAL| HM:PFM:NREP 6 HM:PFM:REP 431->660|PF00563|5e-72|44.1|227/236|EAL| HM:PFM:REP 254->406|PF00990|9.3e-43|41.8|153/161|GGDEF| HM:PFM:REP 9->43|PF03707|0.0008|14.3|35/62|MHYT| HM:PFM:REP 58->118|PF03707|1.1e-13|29.5|61/62|MHYT| HM:PFM:REP 120->170|PF03707|1.7e-13|45.1|51/62|MHYT| HM:PFM:REP 183->235|PF03707|2.7e-08|39.6|48/62|MHYT| RP:SCP:NREP 2 RP:SCP:REP 258->414|1w25A3|2e-33|32.1|156/162|d.58.29.2| RP:SCP:REP 435->662|2basA1|3e-69|21.9|224/257|c.1.33.1| HM:SCP:REP 258->416|1w25A3|2.3e-51|40.5|158/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 428->672|2basA1|1.6e-83|47.8|245/0|c.1.33.1|1/1|EAL domain-like| OP:NHOMO 10470 OP:NHOMOORG 661 OP:PATTERN -------------------------------------------------------------------- I828C---111---26422-2K44-122222-D7777F75ELFc*-------668-----EB3-H4M6753----1----I17CFO8B--------------------1----------------11111111121ABB9A11186nURIMM233FF---4--EN7-CBK4------------S6C42881BB3888886782878878-322338886A6H2OO565655BD-1111111111111111111--2---3----22-----12--------------------------------------------------6BA6J666666696A3SA96675748--6DD89IHFB5547A533352--B499CC61111136bUWB9IcUMWa67A969A7A9I-bWSVUBSTAW71NTTUYZRZcfJIZHCJD3B4CFAB9C6--------HHH6-pFZ11111111222222222222222121111-9BIC5IFE52NKLMMMI9998KKaiCCCC7BNWZGTJc-3TSNcGdLOh13pA7WWYUPchhP-------99ISos5GOHJKORCjTNLP1KGIaFMFXQ6766B664J987----------------YLRXG43kdHcmdrUrbu*srtvoudqnnimlfahzo---EcHj------LSJD5VBPOONPNPPPM-LPNRPJIOOOMNNMOONONRSPJL--1FACGGHFFFFFGGFGGFDEBA9FG1-H67777756777---X-2-2-JMKLFAvJp---------------A9A9A4912-JbZZbXckfeicaacWXac-----2---dOXVQddccdikc*zRTSWTWSLLP3333--c1CC97IJ1111111-619-------------------------7648958645-1- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------2----5---------E3----------2--E-----B---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 456 STR:RPRED 65.7 SQ:SECSTR ##########################################################################################################################################################################################################################################HHHHHTcccHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTEEEccGGGcccGGGGEEEcccccccccHHHHHHcTTTHHHHHHHHHHHHccEEEEEcccHHccccHcTTGGHHHHHTccccccccGGGGGGcHcccHHHHHHHHHHHHHHHTccccEEcccccccGGGccHHHHHHHHGGGHTTTTEEEEEEEEEEcccccEEEEEEEEEEEETTEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHTTccTTcEEEEccHHHHGGTTHHHHHHHHHHHHTTccGGGEEEEEccTTTccccHHHHHHHHHHHTTTcEEEEEEETTTcccHHHHHHHcccEEEEEcTTTccHccccHHHHHHHHHHHHHHHHTcEEEEEccccHHHHHHHHHTTEEEEccTTTcccccTTEEcccHcEEEETccccHHHHHHHHHH#### DISOP:02AL 672-687| PSIPRED ccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEEEccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHcccHHHHHHHHHHHHccccHHHEEEEEcHHHHHccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEcHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEEcHHcccccHHHHHHHHHHccccccHHHHHHccccHHHHcc //