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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88022.2
DDBJ      :             ABC transporter, substrate binding protein (proline/glycine betaine)
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  207/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->317 2regA PDBj e-135 82.4 %
:RPS:PDB   59->137,145->266 3chgA PDBj 2e-20 28.2 %
:RPS:SCOP  25->294 1r9lA  c.94.1.1 * 1e-34 18.7 %
:HMM:SCOP  25->303 1r9lA_ c.94.1.1 * 1e-81 40.6 %
:RPS:PFM   32->286 PF04069 * OpuAC 8e-29 34.8 %
:HMM:PFM   33->286 PF04069 * OpuAC 2.5e-54 27.7 249/257  
:BLT:SWISS 24->159 ORF1_CHRSD 4e-31 45.6 %
:BLT:SWISS 137->303 OPUAC_BACSU 3e-13 27.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88022.2 GT:GENE AAK88022.2 GT:PRODUCT ABC transporter, substrate binding protein (proline/glycine betaine) GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2253125..2254078) GB:FROM 2253125 GB:TO 2254078 GB:DIRECTION - GB:PRODUCT ABC transporter, substrate binding protein (proline/glycine betaine) GB:PROTEIN_ID AAK88022.2 GB:DB_XREF GI:159140410 LENGTH 317 SQ:AASEQ MFANRSRCLALAAAISSMTFSAAVAAEPASCGTVRFSDVGWTDITATTATATVLLKSLGYETDVKLLSVPVTYTSLKNKDIDVFLGNWMPTMEGDIAPYRDDKSVETLRENLTGAKYTLATNAKGAELGIKDFKDIAAHSSELGGKIYGIEPGNDGNRLILDMVAKDSFGLKSFEVVESSEQGMLSQVARAEKSGEPIVFLGWEPHPMNANFKLTYLTGGDEVFGPNFGGATIYTNVRKGYVEECPNVGAFLKNLQFSLPMENEIMGKILNDGLEGEAAATAWLKANPAAIEPWFANVKTKDGSADALPAVKKALGL GT:EXON 1|1-317:0| BL:SWS:NREP 2 BL:SWS:REP 24->159|ORF1_CHRSD|4e-31|45.6|136/155| BL:SWS:REP 137->303|OPUAC_BACSU|3e-13|27.3|161/293| SEG 45->52|tattatat| BL:PDB:NREP 1 BL:PDB:REP 27->317|2regA|e-135|82.4|290/290| RP:PDB:NREP 1 RP:PDB:REP 59->137,145->266|3chgA|2e-20|28.2|193/258| RP:PFM:NREP 1 RP:PFM:REP 32->286|PF04069|8e-29|34.8|250/256|OpuAC| HM:PFM:NREP 1 HM:PFM:REP 33->286|PF04069|2.5e-54|27.7|249/257|OpuAC| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF04069|IPR007210| GO:PFM GO:0005488|"GO:binding"|PF04069|IPR007210| GO:PFM GO:0006810|"GO:transport"|PF04069|IPR007210| RP:SCP:NREP 1 RP:SCP:REP 25->294|1r9lA|1e-34|18.7|268/310|c.94.1.1| HM:SCP:REP 25->303|1r9lA_|1e-81|40.6|278/309|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 414 OP:NHOMOORG 218 OP:PATTERN --------------------------------------11111--11--1111--------------- -----2---------------------------------------21-1--1--------1--2-211111-----------3-----1111-2--------------2----------------------------------------------------1--------------------------------1111111111111112-1111111---23--21111121------------------1-1----1---------111--11-1111111111-11-----------11111111111111--------1-11--------------11-----1--------1112--18----------------------------------22222221224-11-11211-1-11442221212221-----131111-----------2---1-------------------------------------------4445453444344454444-4844-1------1----------3-------------------------1-8241-1111--------------1----------------------------------1-----1-----------------------11---------------------------------------------------------------------------------------------------------181---------------------------4444455554544-334-------------1-----11111------------------------------1------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 91.8 SQ:SECSTR ##########################cccGGccEEEEEccHHHHHHHHHHHHHHHHTTTcEEEEEEccTTHHHHHHHTTcccEEEEEEEcGGGHHHHHHTTTcEEEEEEEEEEEEcEEEEEETTcTccTcccGGGGGcHHHHHTccEEcccTTcHHHHHHHHHHHHHHTTcTTccEEcccHHHHHHHHHHHHHTTccccEEEEcccTHHHHccEEEcccTTcTTcccEHcEEEEEEEETTHHHHcHHHHHHHTTccccHHHHHHHHcTTccEEcTTGGGGcccEEEEccEEEEccccccHHHHcHHHHHHHHHHHcc DISOP:02AL 1-3| PSIPRED cccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccccEEEEEccccccHHHHHHHHccccEEEEEccccccEEEEEEcHHHHHcccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEcccHHHccccEEEcccccccccccccHHHHHEEccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcc //