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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88057.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  115/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.3.1b.85.4
:420 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   191->279 2bsyA PDBj 7e-11 11.2 %
:RPS:PDB   330->412 3dmiA PDBj 2e-07 13.3 %
:RPS:SCOP  194->279 2bsyA2  b.85.4.1 * 2e-11 11.6 %
:RPS:SCOP  313->407 1h1oA2  a.3.1.4 * 9e-08 15.1 %
:HMM:SCOP  282->415 1qksA1 a.3.1.2 * 6.3e-07 19.8 %
:RPS:PFM   9->299 PF06181 * DUF989 e-110 66.7 %
:HMM:PFM   5->300 PF06181 * DUF989 2e-143 59.8 296/301  
:HMM:PFM   331->407 PF00034 * Cytochrom_C 9.6e-10 18.2 77/91  
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88057.2 GT:GENE AAK88057.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2291794..2293056 GB:FROM 2291794 GB:TO 2293056 GB:DIRECTION + GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK88057.2 GB:DB_XREF GI:159140426 LENGTH 420 SQ:AASEQ MYEYAIAWEWMAFAVRWLHVITAIAWIGSSFYFIALDLGLVKRPDMPPGVYGEEWQVHGGGFYHIQKYLVAPARMPEHLTWFKWESYVTWLSGFAMLCIVYYGGADLFLIDHSVLDLTQFQAICLSLASLAIGWLFYDFLCKSPLGNNTWGLMIVLYVALVAMAWGYTQVFTGRAAFLHLGAFTATIMSANVFFIIIPNQKIVVADLIAGRTPDPKYGRIAKQRSLHNNYLTLPVIFFMLSNHYPLAFATQFNWIIAALVFLMGVTIRHWFNTTHARKGKPTWTWLATALIFIVIMWLSTVPKVLTGEEEQKAATLSPMQQQFVSDAHFTKARDVVQGRCSMCHAAEPVWEGVPFTPKSVKLETDEQIAAHAREIYLQAGRSHAMPPGNITAITPDERKVLTAWYESAVSGAGKAEGKTE GT:EXON 1|1-420:0| TM:NTM 7 TM:REGION 16->38| TM:REGION 91->113| TM:REGION 118->140| TM:REGION 144->166| TM:REGION 180->202| TM:REGION 250->272| TM:REGION 282->304| RP:PDB:NREP 2 RP:PDB:REP 191->279|2bsyA|7e-11|11.2|89/249| RP:PDB:REP 330->412|3dmiA|2e-07|13.3|83/87| RP:PFM:NREP 1 RP:PFM:REP 9->299|PF06181|e-110|66.7|291/299|DUF989| HM:PFM:NREP 2 HM:PFM:REP 5->300|PF06181|2e-143|59.8|296/301|DUF989| HM:PFM:REP 331->407|PF00034|9.6e-10|18.2|77/91|Cytochrom_C| RP:SCP:NREP 2 RP:SCP:REP 194->279|2bsyA2|2e-11|11.6|86/136|b.85.4.1| RP:SCP:REP 313->407|1h1oA2|9e-08|15.1|86/90|a.3.1.4| HM:SCP:REP 282->415|1qksA1|6.3e-07|19.8|126/0|a.3.1.2|1/1|Cytochrome c| OP:NHOMO 120 OP:NHOMOORG 116 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111--------111--------1111111-111-11-11-1111--11111121112211---1111111111--------1---1-------------------------------------------1111111----11111111111111111--11121111111-11-1------------------1---------------------------------------------------------------1--1-1------------------------------------------------------------------------------------------------------------------------------------1-------------------------1-1111111111111111111-------------1--------------------------------------------------------------------------------1-- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 180 STR:RPRED 42.9 SQ:SECSTR #############################################################################################################################################################################################ccccEEEcTTcEEEEEEcccccccTTEEEEEEccHHHHHTTEEEccEEEEEEEcccccEEEcTTcEEEEEEEEEGGGEEccccTTEETTT###############################################cccHHHHHHHHHHTHHHHGGGcccccTTccccHHHHHHHcTTcccHHHHHHHHHHccTTccccTTTccHHHHHHHHHHHHHHHHTTTTcc#### DISOP:02AL 1-1,307-316,411-421| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccc //