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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88076.1
DDBJ      :             ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  62/68 : Bacteria  834/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:502 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->378 2db3A PDBj 1e-77 43.8 %
:RPS:PDB   15->369 3bxzB PDBj 3e-77 12.4 %
:RPS:SCOP  29->361 1pjrA1  c.37.1.19 * 1e-55 7.2 %
:HMM:SCOP  36->113 1w36B1 c.37.1.19 * 0.00043 25.0 %
:HMM:SCOP  86->376 1wp9A2 c.37.1.19 * 9.7e-77 45.0 %
:RPS:PFM   38->204 PF00270 * DEAD 3e-44 54.6 %
:RPS:PFM   282->352 PF00271 * Helicase_C 3e-19 56.3 %
:HMM:PFM   38->208 PF00270 * DEAD 1.6e-54 45.8 166/167  
:HMM:PFM   277->353 PF00271 * Helicase_C 1.6e-30 53.2 77/78  
:BLT:SWISS 15->382 RHLE_ECOLI 1e-99 52.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88076.1 GT:GENE AAK88076.1 GT:PRODUCT ATP-dependent RNA helicase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2310614..2312122 GB:FROM 2310614 GB:TO 2312122 GB:DIRECTION + GB:PRODUCT ATP-dependent RNA helicase GB:PROTEIN_ID AAK88076.1 GB:DB_XREF GI:15157502 LENGTH 502 SQ:AASEQ MSLFWRPERQYILTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGGRHNGESRPSRNHAPRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKQRRPARKPGGSGANRHAPAGGNGQEKRASGNGNRGRNR GT:EXON 1|1-502:0| BL:SWS:NREP 1 BL:SWS:REP 15->382|RHLE_ECOLI|1e-99|52.0|367/454| SEG 397->420|rpnnnrggrnnnggqprgpreggr| SEG 494->501|gngnrgrn| BL:PDB:NREP 1 BL:PDB:REP 16->378|2db3A|1e-77|43.8|361/420| RP:PDB:NREP 1 RP:PDB:REP 15->369|3bxzB|3e-77|12.4|346/440| RP:PFM:NREP 2 RP:PFM:REP 38->204|PF00270|3e-44|54.6|163/167|DEAD| RP:PFM:REP 282->352|PF00271|3e-19|56.3|71/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 38->208|PF00270|1.6e-54|45.8|166/167|DEAD| HM:PFM:REP 277->353|PF00271|1.6e-30|53.2|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 29->361|1pjrA1|1e-55|7.2|306/315|c.37.1.19| HM:SCP:REP 36->113|1w36B1|0.00043|25.0|76/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 86->376|1wp9A2|9.7e-77|45.0|269/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11201 OP:NHOMOORG 1095 OP:PATTERN 11-212333333334313323113111--1122123311211134343253441-1-32112221-33 1231333333342332322-24113322222234444566-32443433554555324--4432333566222222221131-12123776825443--6378747AA28--------------2321243234231222211121231222211--1313312114335211111211111151211--1135777777676777776536656777232545466666666444444444444444344445433553443444445544344233333333333333333333323333333333333333333333333-634866666668673522544445-2-132127554-1121-121--215-6334522212333434223433333333333333-3343343424324453433333434434444254455435555555536664333------------211122222122111111343324444355555555555445556554455545462444454644586654555343363222222253244584925253215443-555545555333376524--1-------1111111117111622BB7746D7AAABEEEEEEEEEEECEEDEDD1-2222411111154555666666666666-66666666666566666665555544655555555555454456665666651655667755667114522222444447558434333233334343222222222257896877777666677683222222225BBBB999999CCBB44555555553333232-553333--------21322232---1--12---11121-11122112-----145 WVNOXVR5*TRKSQUQRSPQPPPQRPRPPQPPPNNPPSPQOQQQQQQRPPRQRSRRQSPQPPOOOPOPHQRPPOPPRLRSPPNOQONN-NbQRPUSSOQPRQRdedBU*U*lulrizYWYRWeVtqR*V**o3xi*SYZTnXaiVSabWTfTMwWhaVac*whZXUXkbg*jplVLbak*hedTcxn**Q*vZZeXZaf --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 393 STR:RPRED 78.3 SQ:SECSTR ##EEEEEEEEcccccGGGcHHHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHHHHTTccccccTGGGccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHHHTcccEEEEETHHHHHTTcccccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEEccHHHHHHHHHHHHHcHHHHHTccEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHcccccccccccccHEHHcHcccHHHHHH########################################################################################################### DISOP:02AL 6-7, 390-502| PSIPRED cccccccccccccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEccHHHHHHHHccccEEcccEEEEEEcHHHHcccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHcccccccccccccccEEEEEEcHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //