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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88129.2
DDBJ      :             HlyD family secretion protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  410/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.3.1f.46.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   174->283 3fppB PDBj 5e-07 34.5 %
:RPS:PDB   230->380 3bsdA PDBj 4e-09 9.6 %
:RPS:SCOP  174->396 1iu4A  d.3.1.8 * 1e-22 9.0 %
:HMM:SCOP  53->316 1vf7A_ f.46.1.1 * 3e-09 22.6 %
:RPS:PFM   181->262 PF00529 * HlyD 2e-05 32.1 %
:HMM:PFM   68->295 PF00529 * HlyD 6.5e-22 30.1 226/306  
:BLT:SWISS 173->397 MDTA_ECOSM 9e-17 30.9 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88129.2 GT:GENE AAK88129.2 GT:PRODUCT HlyD family secretion protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2362835..2364028 GB:FROM 2362835 GB:TO 2364028 GB:DIRECTION + GB:PRODUCT HlyD family secretion protein GB:PROTEIN_ID AAK88129.2 GB:DB_XREF GI:159140457 LENGTH 397 SQ:AASEQ MQHKVTFNRFVFLLLSAAALPLSAAAEGEAQAPVKQQNLPSIIVAHAAKRDLVDRIIATGTIRPVDEIYVQPLVDGLSIDTLNVDIGDRVEANAILAVLSSDSLILQKSQLEANKAKAQAAVAQAKAQVLEAEASANDANRQRDRAAKLGQSGSGSVSQVEQTQAQAEVAAAKLNAARQAVSAGEADIKVVDAQIADIDLKLTRTGVKTPVAGIVSAKNAKVGAIASGAGNPLFTVIKDGAIELVADLSETDIQKVKIGQKAYLTVAGGAEKIEGKVRLVSPTVDPTTRLGSVHVVLPENSPARSGMYASAAIIVEETNALALPLSAVTSGREGSTTRKVEGDVVKQVKIETGIEDSGFIEIVSGLAAGDKVVEKAGAFVRDGDRINPVEAQTAASN GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 173->397|MDTA_ECOSM|9e-17|30.9|223/415| COIL:NAA 56 COIL:NSEG 3 COIL:REGION 99->152| COIL:REGION 161->161| COIL:REGION 168->168| SEG 13->26|lllsaaalplsaaa| SEG 110->147|qleankakaqaavaqakaqvleaeasandanrqrdraa| SEG 150->172|gqsgsgsvsqveqtqaqaevaaa| BL:PDB:NREP 1 BL:PDB:REP 174->283|3fppB|5e-07|34.5|110/267| RP:PDB:NREP 1 RP:PDB:REP 230->380|3bsdA|4e-09|9.6|146/359| RP:PFM:NREP 1 RP:PFM:REP 181->262|PF00529|2e-05|32.1|81/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 68->295|PF00529|6.5e-22|30.1|226/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 1 RP:SCP:REP 174->396|1iu4A|1e-22|9.0|222/331|d.3.1.8| HM:SCP:REP 53->316|1vf7A_|3e-09|22.6|221/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 918 OP:NHOMOORG 412 OP:PATTERN -------------------------------------------------------------------- 367--1-------------------------------------1----------------------------------------11111131-211---11212143614---------------222321-13321--1----1-13-222---11------31162431---------------11111-------------------1--------------11111-7-------------------------------------------------------------------------------------------162-41111-111-1-111-----11-----312162321212-1--1114115333------426A4324555322322222333-55546454132-44443325533433234-12222211----------11--122-----------------------------112141--1--1111111------22-------131222-144512243252211124214221-------122123-21111-2-22----4633354132-114413----------------------1--34113241214-11344421353331431343---21-3------11---113333334333-3333344333333333333111--1-1111-1-1-1111-1-1-3312123------------------1111-25563121--1---11--------1112111221--11313231133311122---------1111-22222222224322222-----------111111--------------------------------------1-----1--3- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 54.4 SQ:SECSTR ############################################################################################################################################################################HHHHEEEEEETTEEEEEEEEccccccccccccccccccccEEEEEEcccTTEEEccTEEEccTTccEEEEEEEEEEcccccccccEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEETTEEEEEEEEEEEEEEEccccHHHHHHccccccccEEEE#cTTEEEEEEEEEccccHHHHHHHHHHHcTTcccEEc######## DISOP:02AL 1-5,25-42,387-398| PSIPRED ccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEEEccccEEcccccEEEEEEEccEEEEEEEEcHHHHHHcccccEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEcHHHEEEcccccEEEEEEccEEEEEEEEEEEEEccEEEEEEccccccEEEEccHHHcccccEEEEEcccccccc //