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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88130.1
DDBJ      :             Acr family transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  664/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.55.1d.225.1d.58.44f.35.1
:1106 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->998 2j8sC PDBj 5e-62 25.9 %
:RPS:PDB   4->1008 2dhhA PDBj e-145 18.4 %
:RPS:SCOP  63->216 1mwkA2  c.55.1.1 * 1e-23 15.2 %
:RPS:SCOP  225->320 1iwgA2  d.58.44.1 * 1e-12 15.6 %
:RPS:SCOP  322->489 1iwgA7  f.35.1.1 * 2e-33 32.1 %
:RPS:SCOP  552->671 1iwgA3  d.58.44.1 * 2e-07 23.4 %
:RPS:SCOP  723->813 1iwgA6  d.225.1.1 * 3e-17 19.3 %
:RPS:SCOP  823->1031 1iwgA8  f.35.1.1 * 4e-18 17.8 %
:HMM:SCOP  40->135 1iwgA1 d.58.44.1 * 6.1e-21 37.5 %
:HMM:SCOP  134->322 1iwgA2 d.58.44.1 * 3.6e-14 31.7 %
:HMM:SCOP  289->489 1iwgA7 f.35.1.1 * 3.9e-42 33.7 %
:HMM:SCOP  551->618 1iwgA3 d.58.44.1 * 2.7e-08 28.4 %
:HMM:SCOP  723->813 1iwgA6 d.225.1.1 * 2.7e-13 29.5 %
:HMM:SCOP  808->1036 1iwgA8 f.35.1.1 * 2.9e-48 33.6 %
:RPS:PFM   8->1031 PF00873 * ACR_tran e-167 36.5 %
:HMM:PFM   4->1031 PF00873 * ACR_tran 8.7e-230 31.5 1010/1021  
:BLT:SWISS 7->1008 NOLG_RHIME e-132 32.6 %
:PROS 275->283|PS00221|MIP
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88130.1 GT:GENE AAK88130.1 GT:PRODUCT Acr family transporter GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2364042..2367362 GB:FROM 2364042 GB:TO 2367362 GB:DIRECTION + GB:PRODUCT Acr family transporter GB:PROTEIN_ID AAK88130.1 GB:DB_XREF GI:15157566 LENGTH 1106 SQ:AASEQ MNFSAWSIRNPIAPLLGFALLMILGMQAFNTLPITRFPNIDVPVVAVTVTQSGASPSELEMQVTKEIEDAVAAISGVDEIQSTVVDGQSTTTVVFRIEKPTEEAVQDTKDAIDKIRSDLPADIEVPVVSKIDVEGQAIQTFAVSSPNMTLEELSWFVDDTIKRSLQGQSGIGKVDRYGGADREVRVSLSPEKLDAYGITATEVNSQLRGTNVDLGSGRGQVGGNEQTIRTLGDTRDVSQLANTTIALSNGRFVKLSELGTVTDTYQEQKSFSRFNGNPAVTFAVFRSKGASEVSVAETVAASLDQVRKNNPDVSIQMVDDAVYFTYGNYKAALDTLIEGAILAVIVVLLFLRNWRATLIAAVALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENIARHIKMGKTPYRAALEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLAVARLITPLMAAYLMRAEDAMDDHHDNDGRLMKAYTRMVTATTRKWWARYLTLVGAIAFLVASVMLLAQVPGSFLPPDDASRVTLSVELPPNATLDETDRTTTQIYHALRDINGVESVFILGGASPKGDLELRRATVNVLLQHIDHSLLKLVVNKGLGSIPLIGQYLPKVEEKGRTRPQWDVERDIFAQVRGIPDVRIIKLNDRAERELSFNFLSKNEKDLSDAVGILESRLRASPILANVSSEGALPRPELQIRPRKDEIARLGITPQQISQTVRVATIGDIDAQLTKISLDDRQIPIRVQASLDTRRDLATIRALKIKTASGSLVPLYSVADIDYSEGPSSIKRNDRNRVVSIGSDVPFGTALDTSTAEFKRIVAETKLPASVRLAESGDAKVQGEMQQGFVNAMLLGLMLVLVVLILLFKDVIQPFTILFSLPLAIGGVAVALIITQNALSMPVLIGILMLMGIVTKNAILLVDFAIEMRRHGMERVHAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGIIVSTVLSLIVVPAFFLIMDDVSRLLAHLFGRFVGKKEVEEEALSNEKLSEIAHENSLALSSLEARVASMEKGTGDKASDKGSNILRLPPLAAE GT:EXON 1|1-1106:0| BL:SWS:NREP 1 BL:SWS:REP 7->1008|NOLG_RHIME|e-132|32.6|960/1065| PROS 275->283|PS00221|MIP|PDOC00193| TM:NTM 13 TM:REGION 8->30| TM:REGION 331->352| TM:REGION 356->378| TM:REGION 385->407| TM:REGION 428->450| TM:REGION 463->485| TM:REGION 523->545| TM:REGION 874->896| TM:REGION 901->923| TM:REGION 931->953| TM:REGION 975->997| TM:REGION 1001->1023| TM:REGION 1026->1047| SEG 290->302|asevsvaetvaas| SEG 340->349|ailavivvll| SEG 881->894|llglmlvlvvlill| SEG 1013->1024|iivstvlslivv| BL:PDB:NREP 1 BL:PDB:REP 32->998|2j8sC|5e-62|25.9|926/1040| RP:PDB:NREP 1 RP:PDB:REP 4->1008|2dhhA|e-145|18.4|964/1022| RP:PFM:NREP 1 RP:PFM:REP 8->1031|PF00873|e-167|36.5|991/1014|ACR_tran| HM:PFM:NREP 1 HM:PFM:REP 4->1031|PF00873|8.7e-230|31.5|1010/1021|ACR_tran| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00873|IPR001036| GO:PFM GO:0006810|"GO:transport"|PF00873|IPR001036| GO:PFM GO:0016020|"GO:membrane"|PF00873|IPR001036| RP:SCP:NREP 6 RP:SCP:REP 63->216|1mwkA2|1e-23|15.2|145/163|c.55.1.1| RP:SCP:REP 225->320|1iwgA2|1e-12|15.6|96/104|d.58.44.1| RP:SCP:REP 322->489|1iwgA7|2e-33|32.1|168/199|f.35.1.1| RP:SCP:REP 552->671|1iwgA3|2e-07|23.4|94/107|d.58.44.1| RP:SCP:REP 723->813|1iwgA6|3e-17|19.3|88/88|d.225.1.1| RP:SCP:REP 823->1031|1iwgA8|4e-18|17.8|207/222|f.35.1.1| HM:SCP:REP 40->135|1iwgA1|6.1e-21|37.5|96/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 134->322|1iwgA2|3.6e-14|31.7|104/0|d.58.44.1|2/3|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 289->489|1iwgA7|3.9e-42|33.7|199/200|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 551->618|1iwgA3|2.7e-08|28.4|67/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 723->813|1iwgA6|2.7e-13|29.5|88/88|d.225.1.1|2/2|Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains| HM:SCP:REP 808->1036|1iwgA8|2.9e-48|33.6|220/223|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 4506 OP:NHOMOORG 671 OP:PATTERN -------------------------------------------------------------------- D9K-------------------------------------------11-1--111-11--11--1--1111------------44366FGHD-H23---23G4B8LBJ8C--------------342344533465111111--1-68556551122222534362E47A4-2-----2-----2111--11212222222222222221111212212112122------7311111111111111111111-----------------------------------------------------------------------6116-------1-1-1221--------1-13122522213-1-----31E3CG77C11111BEOJSI9HLIJGD46574664547-NQGGPKML5AA-GAACBBDBBA89BL7AA6495655535888888887CB866B61111111111--1-221241112311-111338936755BCHIGIAA6776CCGG99996BDBHCGGM-5GHF7CA9BNEA7A7AGG9GAC89111111186B6BF75A2467648A5531694779B76AB9AE92A72111222222333333333853598B875IE9JCDB6DEFFEGFKLFFHHDJQKMG--1C85B------76677B67999788A77-6887789768797777777CDC773456545666666546455A64564661-877777765777--17343335989H9C662111121111111117779759222A8DEEECCEFCDFEB99BC111111111B5AAC666669CDCBGHDAEAA8BB54542297BC46AA11111111-----------------------------1---111118C6 -------------1------------------------------------------------------------------------------------------------------------------------------------------------6----9-2-------4--------------C-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1006 STR:RPRED 91.0 SQ:SECSTR ###HHHHHHcTTTTTHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccHHHHHTTTHHHHcTTcccccccccccEEEETccEEccEEccTTccHHHHHHHHHHHHHHHGGGccHHHHHHccEEccccccEEEEEEEccccccHHHHHHHHHHTTHHHHHccccccEEEEccccccccEEEEcHHHHHTTTccHHHHHHHHTTTccccccccccccccccccccccccccHHHHHccEEEccTTccEEHHHHEEEEccccccccEEEETTEEcccEEEEccccccHHHHHHHHHHHHTTTccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTTTHHHHHHHHHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHTTTcHHHHTTHHHHHHTTTTTccccccTTTHHHHHHHHHHHHHHHHHHHHTTTTHHHHcTTTcccccTTTcTTTTTTTHHHHHHHHHccccTTcTHHTTTHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccTTccHHHHHHHHHHHHHTTccTTTEEEEEEEEEEccccccT###################EEEEEEEEEEEEcEEcHcTTTcccGGGcHHHHHHHHHHHTcccTTcccEEEcccTTccccEEEEccccccHHHHHHHHHHHHHccGGccccEEcccccEEcccccccHHHHHHTTccHHHHHHHHHHHHHcc#cEcccEEEccccEEEccccccGGGcccTTTGGGcEEEcTTccEEEGGGcccccccEEccEEEEETTEEEEEEEEcccccccHHHHHHHHHHHHHHHTccTTcEEEEcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHTTcccTTHHHHTTHHHHHHHHcTTccccccccTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTccccTTTHHHHHHHTTHHHHHHHHHHHHHHHccTTTcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH############################################################################# DISOP:02AL 1046-1064, 1077-1095, 1104-1106| PSIPRED ccHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcHHHHHHccccHHHHHHHHHHccccccccEEEEcEEEEEEEEccccccHHHHcccEEEEccccEEEEEEEEEEEEccccccEEEEEcccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccEEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcHHHHccHHHHHHcccccccccEEEEccEEEEEEEcccHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEccccccc //