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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88178.2
DDBJ      :             RNA methylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  549/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:232 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   85->224 3gyqA PDBj 9e-09 28.3 %
:RPS:PDB   84->225 3e5yA PDBj 4e-20 16.9 %
:RPS:SCOP  65->225 1gz0A1  c.116.1.1 * 1e-30 28.1 %
:HMM:SCOP  58->226 1v2xA_ c.116.1.1 * 3.6e-32 30.7 %
:RPS:PFM   84->223 PF00588 * SpoU_methylase 4e-15 40.0 %
:HMM:PFM   84->223 PF00588 * SpoU_methylase 4.4e-30 34.5 139/142  
:HMM:PFM   24->104 PF02515 * CoA_transf_3 0.0008 21.2 80/191  
:BLT:SWISS 24->224 Y905_MYCBO 4e-34 42.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88178.2 GT:GENE AAK88178.2 GT:PRODUCT RNA methylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2411598..2412296) GB:FROM 2411598 GB:TO 2412296 GB:DIRECTION - GB:PRODUCT RNA methylase GB:PROTEIN_ID AAK88178.2 GB:DB_XREF GI:159140480 LENGTH 232 SQ:AASEQ MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV GT:EXON 1|1-232:0| BL:SWS:NREP 1 BL:SWS:REP 24->224|Y905_MYCBO|4e-34|42.9|198/288| SEG 3->14|aaahkaggtfaa| BL:PDB:NREP 1 BL:PDB:REP 85->224|3gyqA|9e-09|28.3|138/261| RP:PDB:NREP 1 RP:PDB:REP 84->225|3e5yA|4e-20|16.9|142/156| RP:PFM:NREP 1 RP:PFM:REP 84->223|PF00588|4e-15|40.0|140/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 84->223|PF00588|4.4e-30|34.5|139/142|SpoU_methylase| HM:PFM:REP 24->104|PF02515|0.0008|21.2|80/191|CoA_transf_3| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 65->225|1gz0A1|1e-30|28.1|160/166|c.116.1.1| HM:SCP:REP 58->226|1v2xA_|3.6e-32|30.7|163/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 735 OP:NHOMOORG 562 OP:PATTERN -------------------------------------------------------------------- 2212222222222332322-22--1122222131112111121121112221111212--2211122222112221112231----111111-------------1--2---------------222-11121-2----11---1-11-211-1111111111221-1111111111111111212--11-112222222222222222-222-22222222--11-----1-12222222222222222212-1121-2-111--111-111---1-1-----------11--1--1-1--111--------111111111111-2-----------2-------1121-1-1-1221-2--1--21-1----12222132122-111111-1-1--33332333333-11111111321122222222221122121-1--------------------1-21111-----11-11-11--11-1111-----11-1-1111111111111111111-1111111-11111-----11111111-1111-111-11-111111-1-1-11--2-----------1111--1-111-111211----------1-11111111---111--11111-1----------1----1-----------1------111112-1111111111-1111111111111111111-1---1111111111111111111111111111-111111111111--11111111111-1-11-------1---1----111-1---1-1--------1---------------------111111-1111111-1--1111111-11-221111--------1-----------------------1----1----1-----1 ------------------------------------------------------------------------------------------------------------2--------------------------------------------------------1-------------3111---111-1-1-1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 67.2 SQ:SECSTR #####################################################################TcEEEEEEcccEEccEEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHHHTTcGEEEcccccccccccHHHHHHHHHHHH####### DISOP:02AL 232-233| PSIPRED cHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHccccccEEEEEEEccccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHcccHHEEEEEEEccHHHHHHHHHHcccEEEEEcccccccHHHccccccEEEEEccccccccHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHccc //