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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88258.1
DDBJ      :             dioxygenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  159/915 : Eukaryota  68/199 : Viruses  0/175   --->[See Alignment]
b.3.6
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->294 1tmxB PDBj 3e-56 44.0 %
:RPS:PDB   14->295 1dltA PDBj 2e-58 30.4 %
:RPS:SCOP  30->295 1s9aA  b.3.6.1 * 1e-73 30.4 %
:HMM:SCOP  6->295 1dmhA_ b.3.6.1 * 5.7e-97 46.5 %
:RPS:PFM   30->96 PF04444 * Dioxygenase_N 6e-21 59.7 %
:RPS:PFM   110->264 PF00775 * Dioxygenase_C 2e-34 51.4 %
:HMM:PFM   109->279 PF00775 * Dioxygenase_C 1.6e-62 49.7 171/183  
:HMM:PFM   30->99 PF04444 * Dioxygenase_N 1.2e-21 40.0 65/74  
:BLT:SWISS 31->294 HQD2_CANAL 6e-58 39.6 %
:PROS 137->165|PS00083|INTRADIOL_DIOXYGENAS

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88258.1 GT:GENE AAK88258.1 GT:PRODUCT dioxygenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2500203..2501090) GB:FROM 2500203 GB:TO 2501090 GB:DIRECTION - GB:PRODUCT dioxygenase GB:PROTEIN_ID AAK88258.1 GB:DB_XREF GI:15157718 LENGTH 295 SQ:AASEQ MDIKMTSDDGYFVEERSAETVIARMRDCDDPRLKEIMAVVTRKLHEAVKEIEPTEEEWMKAIHFLTEVGQICNEWRQEWILFSDILGVSMLVDAINHRKPSGASESTVLGPFHVADAPEMPMGANICLDGKGEDMVVTGRILDTEGAPVAGARIDVWQANDEGFYDVQQKGIQPDFNLRGVFVTGEDGRYWFRAAKPKYYPIPDDGPVGRLLRAMGRHPYRPAHLHYIVSAESFTTLVTHIFDPDDPYIRSDAVFGVKESLLANFDRVEDREKAQELGFAGDWFWSVNHDFVLAR GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 31->294|HQD2_CANAL|6e-58|39.6|260/303| PROS 137->165|PS00083|INTRADIOL_DIOXYGENAS|PDOC00079| BL:PDB:NREP 1 BL:PDB:REP 14->294|1tmxB|3e-56|44.0|275/287| RP:PDB:NREP 1 RP:PDB:REP 14->295|1dltA|2e-58|30.4|276/309| RP:PFM:NREP 2 RP:PFM:REP 30->96|PF04444|6e-21|59.7|67/74|Dioxygenase_N| RP:PFM:REP 110->264|PF00775|2e-34|51.4|142/153|Dioxygenase_C| HM:PFM:NREP 2 HM:PFM:REP 109->279|PF00775|1.6e-62|49.7|171/183|Dioxygenase_C| HM:PFM:REP 30->99|PF04444|1.2e-21|40.0|65/74|Dioxygenase_N| GO:PFM:NREP 8 GO:PFM GO:0005506|"GO:iron ion binding"|PF04444|IPR007535| GO:PFM GO:0009712|"GO:catechol metabolic process"|PF04444|IPR007535| GO:PFM GO:0018576|"GO:catechol 1,2-dioxygenase activity"|PF04444|IPR007535| GO:PFM GO:0055114|"GO:oxidation reduction"|PF04444|IPR007535| GO:PFM GO:0003824|"GO:catalytic activity"|PF00775|IPR000627| GO:PFM GO:0006725|"GO:cellular aromatic compound metabolic process"|PF00775|IPR000627| GO:PFM GO:0008199|"GO:ferric iron binding"|PF00775|IPR000627| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00775|IPR000627| RP:SCP:NREP 1 RP:SCP:REP 30->295|1s9aA|1e-73|30.4|250/256|b.3.6.1| HM:SCP:REP 6->295|1dmhA_|5.7e-97|46.5|284/0|b.3.6.1|1/1|Aromatic compound dioxygenase| OP:NHOMO 504 OP:NHOMOORG 227 OP:PATTERN -------------------------------------------------------------------- --1-2--2444----11----2---3------22231284------------1321------1-12311-------------2-----------------------------------------------------------------1----------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111--------542---1111-11-11---1-1---2--5--11--32222124332124---212----111--------1--------------------------------------16------44334452222244432222124333866--2211--11214-61--1-------------------------------------------------------------------------------------------------------------------------------------------------------------2222---------------------1-------------------------------------11---------------1111112-1-1-22322332134322111-------------------11-----11111111--------------------------------------------------------------- ---------------33335332343422222211122222222223335347523333323--2----1----2------22212---2423111----211-------1-----------------------------------------------1------------------------------3--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 95.6 SQ:SECSTR #############HHHHHHHHTTcccccccHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHccccGTTcHHHHHHHTTHHHHHHHHHHHHccccccccccccccEEcccEEEcEEEcccccTccEEEEEEEEEcTTccccTTcEEEEEEccTTcccTTcccccccTTTTEEEEEccTTcEEEEEEEccccccccTTcHHHHHHHHTTcccccccEEEEEEEcTTcccEEEEEEETTcTTTTccTTccccTTcEEccEEEccHHHHHHTTccccEcEEEEccEEccc DISOP:02AL 1-4, 97-104| PSIPRED cccEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHccccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHcccccccccccHHHHHcccccccEEEEEEEEEEc //