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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88276.1
DDBJ      :             RND multidrug efflux transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  663/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
d.225.1d.58.44f.35.1
:1029 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->1026 2v50B PDBj 0.0 51.9 %
:RPS:PDB   1->1029 3d9bA PDBj 0.0 37.5 %
:RPS:SCOP  8->32 1iwgA7  f.35.1.1 * 1e-04 68.0 %
:RPS:SCOP  38->133 1iwgA1  d.58.44.1 * 7e-19 44.8 %
:RPS:SCOP  183->271 1iwgA6  d.225.1.1 * 5e-08 14.4 %
:RPS:SCOP  322->497 1iwgA7  f.35.1.1 * 6e-39 72.7 %
:RPS:SCOP  563->667 1iwgA3  d.58.44.1 * 4e-20 37.1 %
:RPS:SCOP  721->805 1iwgA6  d.225.1.1 * 3e-20 48.2 %
:RPS:SCOP  812->1025 1iwgA8  f.35.1.1 * 2e-40 53.3 %
:HMM:SCOP  38->133 1iwgA1 d.58.44.1 * 6.5e-24 33.3 %
:HMM:SCOP  134->329 1iwgA2 d.58.44.1 * 2.6e-25 41.2 %
:HMM:SCOP  295->497 1iwgA7 f.35.1.1 * 6.4e-50 40.5 %
:HMM:SCOP  563->669 1iwgA3 d.58.44.1 * 1.5e-30 45.8 %
:HMM:SCOP  670->854 1iwgA4 d.58.44.1 * 2.5e-21 40.4 %
:HMM:SCOP  829->1025 1iwgA7 f.35.1.1 * 3.1e-43 36.5 %
:RPS:PFM   1->1023 PF00873 * ACR_tran 0.0 36.7 %
:HMM:PFM   1->1023 PF00873 * ACR_tran 0 46.6 1013/1021  
:BLT:SWISS 1->1026 MEXB_PSEAE 0.0 51.9 %
:TM
:REPEAT 2|118->491|664->1019
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88276.1 GT:GENE AAK88276.1 GT:PRODUCT RND multidrug efflux transporter GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2522280..2525369 GB:FROM 2522280 GB:TO 2525369 GB:DIRECTION + GB:PRODUCT RND multidrug efflux transporter GB:PROTEIN_ID AAK88276.1 GB:DB_XREF GI:15157740 LENGTH 1029 SQ:AASEQ MAHFFIRRPVFAWVIAIVIMLGGVLAIWTLSISQYPDIAPTTVRVSATYNGASAETVEKSVTTIIEDGMTGLDDLTYMTSSSSTGSAEVTLTFGNSILPDIAQVQVQNKLQLVQSQLPDTVQQQGLQVSRSTSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVGSINVFGSEYAMRIWLDPFKLNKYQLTTADVTGAIQSQNTQVSVGSLGAVPAVKGQQLNVTVTAQSQLTTVADFEKVILKVEKDGATVRLSDVARIEIGQETYGGDSRSNGRPSAGFAVNLATGANALDTAARVKAALTNVEGSLPEGVSIEYPYDTTPFVKLSIEKVVHTLIEAIILVFVVLLVFLQNLRATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAMLLSAVVAIVLTPALCATMLKPIDHHKKKRGPGAWFNRGFGKTTDGYVSSIGYLLKRPLRVMIIFAVVIGGCVWFFSKLPSSFLPQEDQGVLLTIIQTPTGSNIERTNEVVKQVENYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQHAGAIVQRAMGTFFGFRDAQVFPLLPPAIQGMGTSSGFSMYLVDSGRNGTDALTASSKELIALATGNPKISSLRSDSQDNETQMKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRMQPDDLKYWYARNTTGEMVPFSSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMDEMERLTASLPGGYTVAWQGISYQERLSGSQAPMLYALSVLIVFLCLAALYESWSIPFSVILAVPVGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEHGLSLVEAALEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPSFFVIIRRLSRR GT:EXON 1|1-1029:0| BL:SWS:NREP 1 BL:SWS:REP 1->1026|MEXB_PSEAE|0.0|51.9|1026/1046| TM:NTM 13 TM:REGION 11->33| TM:REGION 338->360| TM:REGION 365->387| TM:REGION 393->415| TM:REGION 439->461| TM:REGION 473->495| TM:REGION 534->556| TM:REGION 605->626| TM:REGION 867->889| TM:REGION 892->914| TM:REGION 922->944| TM:REGION 959->981| TM:REGION 1000->1022| NREPEAT 1 REPEAT 2|118->491|664->1019| SEG 103->117|qvqvqnklqlvqsql| SEG 349->358|lvfvvllvfl| SEG 602->617|vesvfgvlgfsfsgsg| SEG 954->967|lveaaleaaklrlr| BL:PDB:NREP 1 BL:PDB:REP 1->1026|2v50B|0.0|51.9|1026/1030| RP:PDB:NREP 1 RP:PDB:REP 1->1029|3d9bA|0.0|37.5|1029/1045| RP:PFM:NREP 1 RP:PFM:REP 1->1023|PF00873|0.0|36.7|1006/1014|ACR_tran| HM:PFM:NREP 1 HM:PFM:REP 1->1023|PF00873|0|46.6|1013/1021|ACR_tran| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00873|IPR001036| GO:PFM GO:0006810|"GO:transport"|PF00873|IPR001036| GO:PFM GO:0016020|"GO:membrane"|PF00873|IPR001036| RP:SCP:NREP 7 RP:SCP:REP 8->32|1iwgA7|1e-04|68.0|25/199|f.35.1.1| RP:SCP:REP 38->133|1iwgA1|7e-19|44.8|96/97|d.58.44.1| RP:SCP:REP 183->271|1iwgA6|5e-08|14.4|84/88|d.225.1.1| RP:SCP:REP 322->497|1iwgA7|6e-39|72.7|176/199|f.35.1.1| RP:SCP:REP 563->667|1iwgA3|4e-20|37.1|105/107|d.58.44.1| RP:SCP:REP 721->805|1iwgA6|3e-20|48.2|85/88|d.225.1.1| RP:SCP:REP 812->1025|1iwgA8|2e-40|53.3|214/222|f.35.1.1| HM:SCP:REP 38->133|1iwgA1|6.5e-24|33.3|96/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 134->329|1iwgA2|2.6e-25|41.2|102/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 295->497|1iwgA7|6.4e-50|40.5|200/200|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 563->669|1iwgA3|1.5e-30|45.8|107/0|d.58.44.1|1/1|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 670->854|1iwgA4|2.5e-21|40.4|99/0|d.58.44.1|2/2|Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains| HM:SCP:REP 829->1025|1iwgA7|3.1e-43|36.5|197/200|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 4452 OP:NHOMOORG 672 OP:PATTERN -------------------------------------------------------------------- D9K-------------------------------------------11-1--111-11--11-----1111------------44365GGGC-J23---23G4B8LBJ8C--------------342344533465111111--1-78555451122222534362E46A3-2-----2-----2111--11212222222222222221111212212112122------6311111111111111111111-----------------------------------------------------------------------6116-------1-1-1221--------1-13122522213-1-----31E3BG77C111119EOJQI9HLIJGD46574664547-NQGGOKMK5A9-F99CBBDBBA89BK7AA6495655434777777776CB866B61111111111--1-221231113311-111338936755BCGHFHAA6776BBFF99996ACAGBGGN-5GHF7BA9BMEA7A7AGG9GAC8A111111197B6BF75A246664895531694779B77AB9AE92A62111222222333333333753597A875IE9JCDB6DEFFEGEKLFFIHDJQKMG--1B75B------76677B67999788A77-6887789768797777777CDC763456545666666546455A64664661-877777765778--17343335989G9C662111121111111117778759222A8DEEECCEFBDFEB89BC111111111B5AAC666669CDCBGHCADAA8AA54442297BB46BB11111111-----------------------------1---111118C6 -1-----------1------------------------------------------------------------------------------------------------------------------------------------------------5----7-2-------5-----------1--B-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1029 STR:RPRED 100.0 SQ:SECSTR cHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccTTccHHHHHTTTHHHHHccccccTTEEEcccEETTTEEEcccEEcTTccHHHHHHHHHHHHHTTGGGccHHHHHHccEEEEccccccEEEEEEEccccccHHHHHHHHHHHTHHHHHHcTTcccEEEEcccEEEEEEEcHHHHHHTTccHHHHHHHHHHHcccccccEETcccccTTccccEEcccccccccHHHHHTcEEEEcTTccEEEGGGGEEEEEEEcccccEEEETTEEEEEEEEccccccccTHHHHHHHHHHHTTTTcccTTEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTTTHHHHHHHHHHHHHHHHHHHTTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHTcTTTEEEEEEEETcccccccTTEEEEEEEEccGGGcccGGGcHHHHHHHHHHHHTTcTTcEEEEEcccccTTccccccEEEEEEEccccTTHHHHHHHHHHHHHHTTcTTcEEEEEcccccccEEEEEEcHHHHHHHTccHHHHHHHHHHHHHcEEcccEEccccEEEEEEEEcGGGcccGGGGGGcEEEcccccEEEHHHHEEEEEEccccEEEEETTEEEEEEEEEccTTccHHHHHHHHHHHTTTccTTEEEEEcTHHHHcccTTTcHHHHHHHHHHHHHHHHHHHHTcccHHHHHHTTHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc DISOP:02AL 665-673| PSIPRED ccHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEEcHHHHHHccccHHHHHHHHHHHcccccccEEEcccccccccEEEEEEEccccccHHHHHcccEEEccccEEEEEEEccEEEEccccccEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccEEEEEEEEEcHHHcccHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEcHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEcHHHHccHHHHHHHccccccccccccccEEEEEEEccccEEEEEcccEEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccEEHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //