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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88298.1
DDBJ      :             mannosidase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  107/915 : Eukaryota  141/199 : Viruses  0/175   --->[See Alignment]
b.1.4b.18.1c.1.8
:818 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   82->790 2vmfA PDBj 3e-37 27.1 %
:RPS:PDB   2->416 3dyoA PDBj 8e-34 15.7 %
:RPS:SCOP  13->190 2je8A4  b.18.1.5 * 6e-17 25.3 %
:RPS:SCOP  189->282 1bglA1  b.1.4.1 * 7e-09 19.8 %
:RPS:SCOP  275->626 2je8A5  c.1.8.3 * 2e-26 23.9 %
:RPS:SCOP  626->737 2vzsA3  b.1.4.1 * 5e-17 16.5 %
:RPS:SCOP  737->815 2je8A2  b.1.4.1 * 3e-14 19.0 %
:HMM:SCOP  38->191 1dp0A3 b.18.1.5 * 5.6e-07 23.1 %
:HMM:SCOP  201->283 1bhgA1 b.1.4.1 * 2.7e-07 28.8 %
:HMM:SCOP  289->625 1dp0A5 c.1.8.3 * 6.5e-33 26.3 %
:RPS:PFM   13->141 PF02837 * Glyco_hydro_2_N 1e-05 29.9 %
:RPS:PFM   296->371 PF02836 * Glyco_hydro_2_C 3e-05 45.9 %
:HMM:PFM   13->120 PF02837 * Glyco_hydro_2_N 4e-07 20.0 105/160  
:HMM:PFM   734->780 PF07606 * DUF1569 0.00062 29.8 47/152  
:BLT:SWISS 35->635 MANBA_RAT 6e-33 28.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88298.1 GT:GENE AAK88298.1 GT:PRODUCT mannosidase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2545452..2547908 GB:FROM 2545452 GB:TO 2547908 GB:DIRECTION + GB:PRODUCT mannosidase GB:PROTEIN_ID AAK88298.1 GB:DB_XREF GI:15157768 LENGTH 818 SQ:AASEQ MRTYLPGESEEVLSEGWTLTLTPADACETPSDIPASLESLHVSVPGTVGQALEAAGKFDRLAPVALNDRDAWYRLTMISDARERAILRFDGLSTIAEIFFNGELIAASQSMFERLEVPVQMTGADELSICFRALAPRLEKPGPRARWRPQMMNTQGLRLIRTTALGYMPGWCPEIHSAGPWRPISLIKQDGVLCTLRSSLDDTGTGKVSIVLQANRDIQSARLICAGYSINLSKAEDGKLLGELIIPGVEIWWPHTHGRPALHEVVLELDGNQHRLGRTGFRQVEIDHGEDGNGFGLKVNGQPVFCRGAVWTTADIVRLPGTRPDYEPWLKKAAEAGMNMIRVGGTMAYETPEFFALCDELGIMVWQDAMLANFDYPAKDDGLRQHIVMEIEQLLESTALSPSFAIFCGGSEMYQQGAMLGLPEQIWKGTLTEEILPELVAEKRPDAAYVANSPSGGALPFFPNAGVGHYYGVGAYCRPLEDARRADLRFAAECLAFANIPEQETLDRYLPGVAVHDPRWKARTPRDRGASWDFEDVRDHYLKLLYEAEPDVLRREDGALYLDMSRAATAEVMEATFAEWRRSGSSCQGALVWTLQDLVPGAGWGIIDAAGRPKSVWHALKRAFRPVQVSLSDEGTNGLDIHILNDTGDSLNTMLELTCLREGLQPVVHAKRPLALLPRESQTIAATDLFGAFFDTTYAYRFGPPSHDVTIARLRDIATGHVIADAFHFPLGRKKALHAANLQVAISETNGHWSLEIGTDRLAQSVHITAEGYRACESWFHLGPGEARKIGLLPETATTEAPPSGEVVSLGSSRRFSF GT:EXON 1|1-818:0| BL:SWS:NREP 1 BL:SWS:REP 35->635|MANBA_RAT|6e-33|28.4|589/881| SEG 465->476|agvghyygvgay| BL:PDB:NREP 1 BL:PDB:REP 82->790|2vmfA|3e-37|27.1|678/835| RP:PDB:NREP 1 RP:PDB:REP 2->416|3dyoA|8e-34|15.7|402/1011| RP:PFM:NREP 2 RP:PFM:REP 13->141|PF02837|1e-05|29.9|117/155|Glyco_hydro_2_N| RP:PFM:REP 296->371|PF02836|3e-05|45.9|61/258|Glyco_hydro_2_C| HM:PFM:NREP 2 HM:PFM:REP 13->120|PF02837|4e-07|20.0|105/160|Glyco_hydro_2_N| HM:PFM:REP 734->780|PF07606|0.00062|29.8|47/152|DUF1569| GO:PFM:NREP 4 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02837|IPR006104| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02837|IPR006104| GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02836|IPR006103| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02836|IPR006103| RP:SCP:NREP 5 RP:SCP:REP 13->190|2je8A4|6e-17|25.3|166/192|b.18.1.5| RP:SCP:REP 189->282|1bglA1|7e-09|19.8|91/114|b.1.4.1| RP:SCP:REP 275->626|2je8A5|2e-26|23.9|335/348|c.1.8.3| RP:SCP:REP 626->737|2vzsA3|5e-17|16.5|97/103|b.1.4.1| RP:SCP:REP 737->815|2je8A2|3e-14|19.0|79/81|b.1.4.1| HM:SCP:REP 38->191|1dp0A3|5.6e-07|23.1|121/207|b.18.1.5|1/1|Galactose-binding domain-like| HM:SCP:REP 201->283|1bhgA1|2.7e-07|28.8|80/0|b.1.4.1|1/1|beta-Galactosidase/glucuronidase domain| HM:SCP:REP 289->625|1dp0A5|6.5e-33|26.3|251/292|c.1.8.3|1/1|(Trans)glycosidases| OP:NHOMO 353 OP:NHOMOORG 249 OP:PATTERN -----------------------------1-------------------------------------- -1--1--------------------------------111-----11-1------1-------11---1-1-----------------1142-111-----1---4---------------------------------22---1-------------------------------------------11----------------------------1-------------2-------------------1----------------------------------------------------------------------1--------------------------------------1----1-1--------------------------------------1--------11---322233133311--------------------------------------------------------------1--------111111-1111111-111111211-211------------------------------------------------------------------------------------------------------1--1--1---------------------------------------------------------------------11--------------------------------------------------------------------------------------------------------------------111-----11-1111111111111111------------------------------------------------1--1-111-2- ----111-------12122222231331111111111111-111111157333322222111-11----1--1-2------11111---1321222---1131----1-23111221-11-11111111191-12211111-111111--1-12111111-41142121-41111--------122122111-1-11-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 789 STR:RPRED 96.5 SQ:SECSTR #HHTcccTTEEEccEEEEEEEEccGGGccHHHHHcccTTcEEEEcccGGGGTccccEEEcTTcccccccEEEEEEEEEEcHHcEEEEEEccEEcEEEEEETTEEEEEEEcTTcEEEcTTTcccEEEEEEEEEEEcccGGGGGccccEEEccEEcccEEEEEEcccEEEEEEEEEEEcTTccEcEEEEEEEEEEEEEEccccTTEEEEEEEEEETTEEEEEEEEEcccccccTTcccTTEEEEEEEEEccccccccccccEEEEEEEEETTccEEEEEEEEEEEEccccEEEETTEEEEETTEEccEEEEEcccccTTTcTccHHHHHHHHHHHHHTTccEEEcTTcTccccHHHHHHHHHHTcEEEEEcccccTTTTTTcGGGHHHHHHHHHHHHHHHTTcTTEEEEEccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccEEcGGGTTccccccccccccHHHHHHHHTcccccccEEEEEEcccHHHHHcccEEEcTTcccccTTHHHHHHHTTcTTEEEEEcccccccHHHHHHHHHHTTEEcEEEcTTccEEEccTTTTTEcccccTTccccGGGGccccccTTccccHHHccccccTTccccHHHHHHHHHHccEEEEEEETTTTEEEEEEccccccGGGEEEEEEEEETTTEEEEEEEEcccccTTcEEEEEcccccccccccEEEEEEEHHHHEEEccccccccTTcccEEEEEEEccGccccccTTcccccccEEEEEcTTTcccccEEEEEEEcTTcEEccccEEEcTTccEEE############################ DISOP:02AL 812-818| PSIPRED ccccccccccEEEcccEEEEEccccccccccccccccccEEEEcccHHHHHHHHccccccccccccccccEEEEEEEEcccccEEEEEEccccEEEEEEEccEEEEEEccccEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEccEEEEEEEEEEcccEEEEEEEEEEEEEccccEEEEccEEEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEEEcccEEEEEEEEEEEEEEccccccccEEEEccEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHccHHHHHHcHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccHHHHccccccccHHcccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEEEEcccccHHHHHHHHHHccEEEEEEEcccccEEEEEEEccccccEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEHHHccccccHHHHHccccccccEEEEEEEEccccEEcccEEcccccHHHccccccEEEEEEEcccEEEEEEEEcccEEEEEEEccccEEccccEEcccccEEEEEEEEcccHHHccccEEEEEccccccccc //