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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88312.1
DDBJ      :             ABC transporter, membrane spanning protein (oligopeptide)
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  772/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:391 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   288->318 3dhwA PDBj 5e-05 32.3 %
:RPS:SCOP  167->385 2r6gG1  f.58.1.1 * 6e-20 10.2 %
:HMM:PFM   202->389 PF00528 * BPD_transp_1 1.9e-27 28.4 176/185  
:BLT:SWISS 43->115 APPC_BACSU 1e-04 26.0 %
:BLT:SWISS 166->389 APPC_BACSU 6e-50 43.6 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88312.1 GT:GENE AAK88312.1 GT:PRODUCT ABC transporter, membrane spanning protein (oligopeptide) GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2566051..2567226 GB:FROM 2566051 GB:TO 2567226 GB:DIRECTION + GB:PRODUCT ABC transporter, membrane spanning protein (oligopeptide) GB:PROTEIN_ID AAK88312.1 GB:DB_XREF GI:15157786 LENGTH 391 SQ:AASEQ MTSSIPKSGEALPHYVSTAPFDPSLIEPNTSGMAAFSKASQLKLMWWQFRQHKIAVWSGAFLALIYLSILISEFLAPYNLHTRNIEHIYAPPQAIHLFDDGKFVGPFVYGREMTLDMDNLRRVYRDVPTDIQPLRFFCKGDTYRFWGMFEGRTHFVCPAEGGEMFLLGTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIGGLAGYRGGTFDLIVQRIIEVLQSIPSIPLWLALAAIMPVTWSPILVYLGITIILGMLDWTGLARAVRSKLLALREEDYVLSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSFLGLGLRPPITSWGILLTEARSVSVIALYPWLLIPTIPVVLVILAFNFFGDGLRDAADPFR GT:EXON 1|1-391:0| BL:SWS:NREP 2 BL:SWS:REP 43->115|APPC_BACSU|1e-04|26.0|73/303| BL:SWS:REP 166->389|APPC_BACSU|6e-50|43.6|218/303| TM:NTM 5 TM:REGION 57->79| TM:REGION 179->201| TM:REGION 241->263| TM:REGION 306->328| TM:REGION 350->372| RP:PDB:NREP 1 RP:PDB:REP 288->318|3dhwA|5e-05|32.3|31/203| HM:PFM:NREP 1 HM:PFM:REP 202->389|PF00528|1.9e-27|28.4|176/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 167->385|2r6gG1|6e-20|10.2|216/284|f.58.1.1| OP:NHOMO 3547 OP:NHOMOORG 834 OP:PATTERN 4441313155554453343332113336435212---1-----113-52-DA5-54434132314-11 1114D453344-5123322-2311292222224333277817-86E94355369732611552385677A43222733323-311111--------2--------11--122222222222222211111111121466952216A33223332222------32115322--11----1-1-A5433981423666664564546445A76663655324C521222222G6155555555655556333222222331-12111--33111112234333333311112211111112222222222222241134311111C36244434541422222111153153C-111B9631-282-3362174311----112-132GHP114854B1AAAAA998AAL-44C43A3DQP1-lRRXIIEWTLOPJ4-115BEA6AA7CD1111111123322319--------------------------------1-1CFCBC57777544555559955552566D64A7113342353343D5DR241132242-------111211346132352233331111111211----14111-1-------112212221113-1211553121111151111111111111111121--13211------76JD3987777777777-7777777777777777776ABACA3366666666666656566877667574-566666666666---11-1-111111174722212223322312222222121234133233657265442ABA1----1---255566666656688--1-------------12111111111111117-111211-1212-2122212112211143754BEB89212 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------1--1---1-------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 31 STR:RPRED 7.9 SQ:SECSTR ###############################################################################################################################################################################################################################################################################################HHHHTccTHHHHHHTTHHHHHHHHHHHHHHH######################################################################### DISOP:02AL 1-5, 7-10, 25-40| PSIPRED ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEccccEEcccEEEEEccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //