[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88370.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  298/915 : Eukaryota  100/199 : Viruses  0/175   --->[See Alignment]
b.122.1
:147 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->147 1zceA PDBj 1e-73 98.6 %
:RPS:PDB   3->140 2ar1A PDBj 2e-46 44.9 %
:RPS:SCOP  2->147 1zceA1  b.122.1.8 * 3e-57 95.2 %
:HMM:SCOP  2->147 1zceA1 b.122.1.8 * 6.4e-50 46.2 %
:RPS:PFM   3->130 PF01878 * DUF55 2e-29 54.0 %
:HMM:PFM   3->136 PF01878 * DUF55 2.9e-47 51.5 132/143  
:BLT:SWISS 1->130 THYN1_MOUSE 1e-23 47.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88370.1 GT:GENE AAK88370.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2632696..2633139) GB:FROM 2632696 GB:TO 2633139 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK88370.1 GB:DB_XREF GI:15157855 LENGTH 147 SQ:AASEQ MANYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGGLANPPKSPD GT:EXON 1|1-147:0| BL:SWS:NREP 1 BL:SWS:REP 1->130|THYN1_MOUSE|1e-23|47.7|130/226| BL:PDB:NREP 1 BL:PDB:REP 2->147|1zceA|1e-73|98.6|139/139| RP:PDB:NREP 1 RP:PDB:REP 3->140|2ar1A|2e-46|44.9|136/157| RP:PFM:NREP 1 RP:PFM:REP 3->130|PF01878|2e-29|54.0|126/142|DUF55| HM:PFM:NREP 1 HM:PFM:REP 3->136|PF01878|2.9e-47|51.5|132/143|DUF55| RP:SCP:NREP 1 RP:SCP:REP 2->147|1zceA1|3e-57|95.2|146/146|b.122.1.8| HM:SCP:REP 2->147|1zceA1|6.4e-50|46.2|143/0|b.122.1.8|1/1|PUA domain-like| OP:NHOMO 425 OP:NHOMOORG 400 OP:PATTERN ------------------------------------------------------------------11 ------------------------------------------------------------------------------------1--1-----------------111-1--------------------------11111---1---11111111111111111111111111111111111-1111-------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1-1---111111111111111111111111111111-11111111111111111111111111-1-11111111111111111111111111--111111-----------------1-1111111------1111111-11111111111111111111--1111-1--1-1-1-11-1111---------111-111-----1111-111111111111111111----------------------------11---111--11-1111111-1111-1--1------111--------------------------------------------------------------------------------------------111111----111-1-----------------------1-111111111111111-111-------------1-----111-111111111111111----111111-----------------------------------------------1- --------211-----11111111-1111--11111------1---1-111---1-111111-----------1------------1----111-11-1--1------1-2111112-1-11111-131465-212111111111-11--11-111111----11--------11111-6---1111-111-11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 99.3 SQ:SECSTR #ccEEEEEEcTTTccHHHHHHHcEEcEEccccccHHHHHHHHHccTTcEEEEEEcccccEEEEEEEEEEEEEEcGGGGcccccEEEEEEEEEEEEEEEEHHHHTTcGGGTTcHHHHcccccEEEEcHHHHHHHHHHHHHHccccccc DISOP:02AL 140-147| PSIPRED ccccccEEcccccccHHHHHHccccccccccEEcHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEEEEEEcccccccHHHHHccccHHHcEEEEccccccccccHHHHHHHHHHccccccccccc //