[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88387.1
DDBJ      :             transcriptional regulator, MarR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  76/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:152 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->144 2fbhA PDBj 2e-10 35.4 %
:RPS:PDB   7->144 2a61A PDBj 2e-17 17.6 %
:RPS:SCOP  7->144 2a61A1  a.4.5.28 * 2e-18 17.6 %
:HMM:SCOP  4->145 1jgsA_ a.4.5.28 * 9e-28 33.1 %
:RPS:PFM   36->93 PF01047 * MarR 3e-06 41.4 %
:HMM:PFM   36->94 PF01047 * MarR 6.5e-14 32.2 59/59  
:BLT:SWISS 52->143 SLYA_SERMA 2e-09 31.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88387.1 GT:GENE AAK88387.1 GT:PRODUCT transcriptional regulator, MarR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2649520..2649978 GB:FROM 2649520 GB:TO 2649978 GB:DIRECTION + GB:PRODUCT transcriptional regulator, MarR family GB:PROTEIN_ID AAK88387.1 GB:DB_XREF GI:15157876 LENGTH 152 SQ:AASEQ MGTKREKDSLAFLLNSGARLLNNAFERRISEAGLGLTPGEARALLTVAVVDGSKQSDIAARLGIEPMTICAYLDKLQSLDLIERQQDPQDRRSKRIVLTKNSTDMLEAVRQEIDELVRHATRGLNEDEVALFRSFLQTLRDNLQPEQPGQSC GT:EXON 1|1-152:0| BL:SWS:NREP 1 BL:SWS:REP 52->143|SLYA_SERMA|2e-09|31.5|92/145| BL:PDB:NREP 1 BL:PDB:REP 13->144|2fbhA|2e-10|35.4|127/137| RP:PDB:NREP 1 RP:PDB:REP 7->144|2a61A|2e-17|17.6|136/142| RP:PFM:NREP 1 RP:PFM:REP 36->93|PF01047|3e-06|41.4|58/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 36->94|PF01047|6.5e-14|32.2|59/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 7->144|2a61A1|2e-18|17.6|136/139|a.4.5.28| HM:SCP:REP 4->145|1jgsA_|9e-28|33.1|136/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 91 OP:NHOMOORG 76 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------1-------------------------------------------------------------1------------------------1--------------------------------------------------------------1-----------------------------1-------2-------------------------------------------------------1-------------------------------------11--------1-1---------1-1-------1-111---------1----111--------111------------------1---------232-411-2211112211-----1-1----------------1---1-------------------------------11---111--------------2---------1---2---------------------------------------1---1----------2-11-------------------------------------11--1------1---------111----------1-------------1------------------------------------------------------------------------------------1--1-------11-------------------------------------------1-------------1----------------------------------------------------------------------1-1---1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 96.1 SQ:SECSTR ##cccccHHHHHHHHHHHHHHHHHHHTTHHHGTHTccHHHHHHHHHHHHHccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHH#### DISOP:02AL 1-3, 142-152| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccc //