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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88449.1
DDBJ      :             dehydrogenase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  303/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
c.3.1d.16.1
:367 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->365 3dmeA PDBj e-104 55.5 %
:RPS:PDB   16->365 3dmeA PDBj 1e-33 55.1 %
:RPS:SCOP  17->270 1ng3A1  c.3.1.2 * 8e-16 13.9 %
:RPS:SCOP  249->315 1ng3A2  d.16.1.3 * 7e-05 13.6 %
:HMM:SCOP  3->322 1pj5A2 c.3.1.2 * 6.5e-44 30.6 %
:RPS:PFM   16->121 PF01266 * DAO 6e-07 36.5 %
:HMM:PFM   5->363 PF01266 * DAO 4.7e-59 27.0 337/358  
:BLT:SWISS 16->271 L2HDH_PONAB 1e-29 33.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88449.1 GT:GENE AAK88449.1 GT:PRODUCT dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2729525..2730628 GB:FROM 2729525 GB:TO 2730628 GB:DIRECTION + GB:PRODUCT dehydrogenase GB:PROTEIN_ID AAK88449.1 GB:DB_XREF GI:15157950 LENGTH 367 SQ:AASEQ MTDIDAIIIGAGVIGLATARELSMHGLSVIILESETEFGSATSSRNSEVIHAGLYYPAGSLKARLCVEGRQRLYDFCESHGVAHRHCGKLIVATSDDETPLLVALGAKGKANGCDDLELIDQRHALSLEPALACSSALLSPSTGIIDSHGYMLALLGEAQDHGAALALNAPFERAEAIGDGFRVHVGGKEPVSLTCRLLVNSAGLVAPMVAAMIEGLPSVAIPQARFAKGSYFSLTGKSPFSRLIYPAPHTHGLGVHLTLDLAGQARFGPDVEWVDTIDYAVDPRRMEGFGDAIRRYWPGLPEHTLAPAYSGIRPKISGPDEPAMDFRIDGPETHGFPGLVNLFGIESPGLTASLAIAGEIAARLEA GT:EXON 1|1-367:0| BL:SWS:NREP 1 BL:SWS:REP 16->271|L2HDH_PONAB|1e-29|33.2|253/419| SEG 3->15|didaiiigagvig| SEG 125->142|alslepalacssallsps| BL:PDB:NREP 1 BL:PDB:REP 29->365|3dmeA|e-104|55.5|337/366| RP:PDB:NREP 1 RP:PDB:REP 16->365|3dmeA|1e-33|55.1|350/366| RP:PFM:NREP 1 RP:PFM:REP 16->121|PF01266|6e-07|36.5|104/354|DAO| HM:PFM:NREP 1 HM:PFM:REP 5->363|PF01266|4.7e-59|27.0|337/358|DAO| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| RP:SCP:NREP 2 RP:SCP:REP 17->270|1ng3A1|8e-16|13.9|244/276|c.3.1.2| RP:SCP:REP 249->315|1ng3A2|7e-05|13.6|66/88|d.16.1.3| HM:SCP:REP 3->322|1pj5A2|6.5e-44|30.6|291/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 549 OP:NHOMOORG 482 OP:PATTERN -----------------------1-----11-----------------------11-2111-1----- --1-1----------------2---1------21111-111211-1------111-------1-1111211----------1-------------------------11-------------------------1----------1-1-111------------1-1111-1-1--1------------1-------------------1-------1-1-------------------------------------------------------------------------------------------------------112112222222121----122122-2---11------11---1111-1--112111------111211111111-111-111111-11111111111--11---11--1111-11---1111----------------111--------------------------------1--111111111111111111211111111111111-1---111111-1111--1----1-----------11----------21----1-11-----------1-1---------------------1--------1-1---1------------1-----1-------------1------1111111111-1111111111111111111111--1-111-1111111111111111-1111------------------11111------111---------------------------221212--11111121--------------11111111-11---1-11---------11----11--------1----------1--1-----1-1-----11---1-1-11-- ----112-211-11211111111111111111111111111111111111111112111111111-11-1--111-----111111---11111111111111322-14122513121111-1111121251-2231111211111111111---131211-1-11111-11121111--111112112112121111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 351 STR:RPRED 95.6 SQ:SECSTR ###############HHHHHHHHHTTccEEEEcccccccccTTcccccEEcccccccTTcHHHHHHHHHHHHHHHHHHHHTccEEcccEEEEEccHHHHTTHHHHHHHHHHTTccccEEEEHHHHHHHcTTccccEEEEETTcEEEcHHHHHHHHHHHHHHTTcEEEccccEEEEEEcTTcEEEEEcTTccEEEEEEEEEEccGGGHHHHHHTEETccGGGccccEEEEEEEEEcccccccccEEEEcTTcccccccEEEcTTccEEEccccEEEccccccccGGGGGGHHHHHHTTcTTccTTccEEEEEEEEEEcccTTccccccEEEcHHHHccTTEEEEEcccTTHHHHHHHHHHHHHHHHH# DISOP:02AL 367-368| PSIPRED ccEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEcccEEEEcccHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHcccEEEcccEEEEEEEEccEEEEEEccccEEEEEccEEEEcccccHHHHHHHccccccccEEEEEEEcEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEcccccccccccccccHHHHHHHHHHHHHHcccccHHHEEEEEccEEEEEcccccccccEEEccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcc //