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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88454.2
DDBJ      :             oxidoreductase
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  593/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.58.32
:480 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->228 2uuvC PDBj 9e-18 27.8 %
:RPS:PDB   15->471 1e8gA PDBj 4e-67 14.7 %
:RPS:SCOP  15->223 1i19A2  d.145.1.1 * 1e-39 20.2 %
:RPS:SCOP  225->471 1f0xA1  d.58.32.2 * 2e-28 16.4 %
:HMM:SCOP  8->224 1f0xA2 d.145.1.1 * 8.2e-71 50.0 %
:HMM:SCOP  197->481 1f0xA1 d.58.32.2 * 4.3e-50 34.0 %
:RPS:PFM   46->183 PF01565 * FAD_binding_4 7e-22 43.7 %
:RPS:PFM   224->471 PF02913 * FAD-oxidase_C 4e-20 34.2 %
:HMM:PFM   224->471 PF02913 * FAD-oxidase_C 8.5e-44 29.8 238/249  
:HMM:PFM   48->184 PF01565 * FAD_binding_4 1.8e-36 39.8 133/138  
:BLT:SWISS 3->470 D2HDH_BOVIN 2e-80 40.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88454.2 GT:GENE AAK88454.2 GT:PRODUCT oxidoreductase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2735603..2737045 GB:FROM 2735603 GB:TO 2737045 GB:DIRECTION + GB:PRODUCT oxidoreductase GB:PROTEIN_ID AAK88454.2 GB:DB_XREF GI:159140607 LENGTH 480 SQ:AASEQ MELSEHDIGELRFSLKNRLGEALLLTSQEDMLRYCRDWHGDVTSSAVAVIRPRSTKEVSDTVIACAELGLAIIPQGGNTGLVLGGIPDAPKHQVVLSLERMNAIRTIDSDDFSAVVEAGCILSEFKDAVQDKGMFFPLSLGAQGSCRIGGNVSTNAGGINVLRYGMTRELVLGLEVVLPDGTIWNGLSTLRKDNRGIDLKQLFIGAEGTLGIITAVAVKLYPNPEHVETALLGLNSLDDAIKLYRRARRECCDLMSAFEFMPPVAFTLAIEAIPDLKMPIAGDYPAYVLMEISGSGLVDTADLMGRFLEGVMEDGLVLDGVIASSRAQAQSLWLFREGMNEGQALRGSHMRTDISVPLSKLAAFVAEAEAELAEKLPECLAVSYGHVGDGNVHLNVLPPNGATLEEREAFIYKSKTLVNEVLDRYVGSISAEHGIGRLKRSDFESRLSDVQRRMITGLKNAFDPDLRMNPGCQITLQPDS GT:EXON 1|1-480:0| BL:SWS:NREP 1 BL:SWS:REP 3->470|D2HDH_BOVIN|2e-80|40.2|450/544| SEG 361->381|laafvaeaeaelaeklpecla| BL:PDB:NREP 1 BL:PDB:REP 40->228|2uuvC|9e-18|27.8|180/491| RP:PDB:NREP 1 RP:PDB:REP 15->471|1e8gA|4e-67|14.7|455/550| RP:PFM:NREP 2 RP:PFM:REP 46->183|PF01565|7e-22|43.7|135/139|FAD_binding_4| RP:PFM:REP 224->471|PF02913|4e-20|34.2|237/242|FAD-oxidase_C| HM:PFM:NREP 2 HM:PFM:REP 224->471|PF02913|8.5e-44|29.8|238/249|FAD-oxidase_C| HM:PFM:REP 48->184|PF01565|1.8e-36|39.8|133/138|FAD_binding_4| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01565|IPR006094| GO:PFM GO:0050660|"GO:FAD binding"|PF01565|IPR006094| GO:PFM GO:0003824|"GO:catalytic activity"|PF02913|IPR004113| GO:PFM GO:0050660|"GO:FAD binding"|PF02913|IPR004113| RP:SCP:NREP 2 RP:SCP:REP 15->223|1i19A2|1e-39|20.2|203/217|d.145.1.1| RP:SCP:REP 225->471|1f0xA1|2e-28|16.4|220/237|d.58.32.2| HM:SCP:REP 8->224|1f0xA2|8.2e-71|50.0|214/0|d.145.1.1|1/1|FAD-binding domain| HM:SCP:REP 197->481|1f0xA1|4.3e-50|34.0|259/0|d.58.32.2|1/1|FAD-linked oxidases, C-terminal domain| OP:NHOMO 2193 OP:NHOMOORG 821 OP:PATTERN 22-1-132223233331122221311111121----------------12111----1--12113--- 11354-------1-33344-432255545553333328B613323-12-111133311--23414543211--------1-1211111-------------11-1--------------------1122122221166633---122222332222211122222222222-1-----1----22233--131122222222222222253111122234413--------2------------------------1111----11--11------------------------------------------------------3-121111111212-122211121-1-1--2-461121--32--1--1-221311411111328552254664544444443446-45544A5645416444459545876432155544564442222222232222224-----------------------------1126115444555575654444667644443384668771244354433736439223211-14111111142233414622324343444-212112222443435231--111111111111121111111122---13---2--11-111111111-11-122---4324------2111-1-3213333333-233323333323333333112111-1-111111111111111121121111------1----111---1--111----32344-----1---------11111112323144442333322232232----------1111111111111122222222232222112-221122----------1--------------------------11---1---311 ----332-741-2423444353456543333233333433233233334445674334344423324334223243313334445312-46442323332322433-324733243131-1332742529M5-43512113223113-3131-33241569434322434335342222H2221131163312385642 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 469 STR:RPRED 97.7 SQ:SECSTR #####HHHHHTTccHHHHHcGGGEEEccccccccccccccTTcccccEEEccccHHHHHHHHHHHHHHTccEEEEcccccTTTTTTccccTTcEEEEcTTcccEEEEETTTTEEEEcTTccHHHHHHHHHHTTcTTTEEccccccTTccHHHHHHTTcccccTTccTGGGEEEEEEEETTccEGGGTTccGGGccccTTTTTcGGcccccEEEEEEEEEcEEccccEEEEEEEEccTTHHHHHHHHHHHHHTTccccccEEEEHHHHHHHHccGGGTccccccccHHHHHHHHHHHTcccEEEEEEEHHHHHHTTcTTcEEEcGGGccTTcHHHHHHHHTTTccccGGGGGGEEcccHHHEHHHHHHHHHHHHHHHHTccccEEEEEccccEEEEEEEEEETTcHHHHHHHHHHHHHHHHHHHHTTcccccccGGGHHHHHHHTcHHHHHHHHHHHHHHHHHcTTccccTTTcc###### DISOP:02AL 1-1,3-3,477-481| PSIPRED ccccHHHHHHHHHHHHHHcccccEEccHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccccccEEEEEccccEEEEEccccHHHHHHHHHHcccEEEcccccccccEEcHHcccccccccccccHHHHHEEEEEEEEcccccEEEEccccccccccccHHHHHHcccccEEEEEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccc //