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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88455.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  454/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:238 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->224 2di3B PDBj 7e-12 32.6 %
:RPS:PDB   17->231 1e2xA PDBj 7e-28 17.0 %
:RPS:SCOP  17->79 1e2xA1  a.4.5.6 * 2e-16 27.0 %
:RPS:SCOP  97->231 2hs5A2  a.78.1.1 * 9e-16 13.6 %
:HMM:SCOP  5->121 1v4rA1 a.4.5.6 * 7.3e-19 42.2 %
:RPS:PFM   17->77 PF00392 * GntR 5e-10 47.5 %
:RPS:PFM   101->224 PF07729 * FCD 2e-07 34.7 %
:HMM:PFM   101->224 PF07729 * FCD 4.4e-23 33.9 121/125  
:HMM:PFM   17->77 PF00392 * GntR 2.2e-21 49.2 61/64  
:BLT:SWISS 17->224 UXUR_HAEIN 3e-18 30.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88455.1 GT:GENE AAK88455.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2737162..2737878 GB:FROM 2737162 GB:TO 2737878 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAK88455.1 GB:DB_XREF GI:15157956 LENGTH 238 SQ:AASEQ MTLEFNQIHRNDHLPGRIAAEIAREINDSQLGPGDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGVGAFVTDPRQRLSIRIEQSTLNDPENFRDLMQLRMSLEIDAAGLAALHHKPEHLEKFDKAIYGMRNAIEWSKDGVEADLDFHRTMAQATGNEYFLIFLGFIAQRISSAINTAFSRAVYGEILEITINEHVVLRDAIASRNVALARDAMRQHILGAARRLNIDLDIF GT:EXON 1|1-238:0| BL:SWS:NREP 1 BL:SWS:REP 17->224|UXUR_HAEIN|3e-18|30.7|205/266| BL:PDB:NREP 1 BL:PDB:REP 22->224|2di3B|7e-12|32.6|190/230| RP:PDB:NREP 1 RP:PDB:REP 17->231|1e2xA|7e-28|17.0|212/222| RP:PFM:NREP 2 RP:PFM:REP 17->77|PF00392|5e-10|47.5|61/64|GntR| RP:PFM:REP 101->224|PF07729|2e-07|34.7|121/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 101->224|PF07729|4.4e-23|33.9|121/125|FCD| HM:PFM:REP 17->77|PF00392|2.2e-21|49.2|61/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 17->79|1e2xA1|2e-16|27.0|63/73|a.4.5.6| RP:SCP:REP 97->231|2hs5A2|9e-16|13.6|132/138|a.78.1.1| HM:SCP:REP 5->121|1v4rA1|7.3e-19|42.2|90/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1592 OP:NHOMOORG 458 OP:PATTERN --------------------------------------------1----------------------- 1-2-2-12222-1-23222-2---4822222212321689-3-12231-1-188B-------312379532----1------5-----11-------------1-211-3-----------------------------------2-------------------------------------3-2---1-211222222221222231512222222121-3--111111221--------------1---1--------------------------1111111---------1-----------1--------------1-71242222222121213311112----1111-66-231-113----------4221-----1-31----1111-5545555545C-1-2-131-4A1-CAA7CDBIFCGF383-13424156112--------211--1--------------------------------1-2--364364453546222-33DA3222-274A667A-1432223116384C4--3----111111111---112-13-12121-2--1-1-1--2211-----1-2----------------------------13124-23342232324233442222422-------------57433717557777777-5767878786578777778656552128485868887768657555477553-444444444444---------------174---1-1-1111-22-3223222---412222698A465771575----------1114111112231211----------------------------------------------------------------1---1-1 --------------------------------------------------------------------------------------------------------------------------------------------------------------3-----------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 234 STR:RPRED 98.3 SQ:SECSTR ####EEEHcccccccHHHHHHHHHHHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHccGGGHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTccccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTcHcccHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHHEEEcTTc DISOP:02AL 1-17| PSIPRED cccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccc //