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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88467.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  186/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:138 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->103 1dm9B PDBj 4e-10 33.7 %
:RPS:PDB   11->118 1dm9B PDBj 8e-22 29.8 %
:RPS:SCOP  13->70 1jh3A  d.66.1.4 * 2e-12 27.6 %
:HMM:SCOP  9->98 1dm9A_ d.66.1.3 * 1.6e-20 36.0 %
:RPS:PFM   14->58 PF01479 * S4 7e-06 48.9 %
:HMM:PFM   13->59 PF01479 * S4 4.1e-18 46.8 47/48  
:BLT:SWISS 14->103 HSLR_ECOLI 1e-09 33.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88467.1 GT:GENE AAK88467.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2750884..2751300) GB:FROM 2750884 GB:TO 2751300 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK88467.1 GB:DB_XREF GI:15157972 LENGTH 138 SQ:AASEQ MGSNEQPLESTRQRLDKWLFFARMAKSRSLAQSYIQSGHVKVNGATIRQPSHMLKAGDRLDIGFERMDKVLVVKSGGARRGPYEEARLLYDDQTPQREPSDRLTPLEQALRESGSGRPTKKERRALDRFLSDSDGSKE GT:EXON 1|1-138:0| BL:SWS:NREP 1 BL:SWS:REP 14->103|HSLR_ECOLI|1e-09|33.7|89/133| BL:PDB:NREP 1 BL:PDB:REP 14->103|1dm9B|4e-10|33.7|89/107| RP:PDB:NREP 1 RP:PDB:REP 11->118|1dm9B|8e-22|29.8|104/107| RP:PFM:NREP 1 RP:PFM:REP 14->58|PF01479|7e-06|48.9|45/46|S4| HM:PFM:NREP 1 HM:PFM:REP 13->59|PF01479|4.1e-18|46.8|47/48|S4| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 13->70|1jh3A|2e-12|27.6|58/99|d.66.1.4| HM:SCP:REP 9->98|1dm9A_|1.6e-20|36.0|89/104|d.66.1.3|1/1|Alpha-L RNA-binding motif| OP:NHOMO 187 OP:NHOMOORG 186 OP:PATTERN -------------------------------------------------------------------- ----11111111-1------------------1---1111-11111------11111------1---11----------------------1--------1----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------11111111-111111111111111-1111111-111-111111111111-1----1---11111-----------1-111-------------------------------11--1----1111111111111111111111111111--111-11--1111---11111111112111111--11---------------------------------------------------------------11-1-------------------------11------------1---------------------------------------------------1-1-1--------1----------------1----------11-----1--1--------111-11111---11111--111111-111---------1---1--------------------------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 111 STR:RPRED 80.4 SQ:SECSTR ####HHHHHHccccHHHHHHHTTccccHHHHHHHHHTTcEEETTEEcccTTccccTTcEEEEEETTEEEEEEEcccccccccTTGGGGGEEEcHHHHHHHHHHHHHHHH###HHHHcc#################### DISOP:02AL 1-11, 99-123, 127-138| PSIPRED cccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEEccccEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccc //