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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88480.1
DDBJ      :             transcriptional regulator, CarD family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  266/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.126.1
:189 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  15->61 2eyqA1  b.34.18.1 * 5e-04 30.4 %
:RPS:SCOP  45->107 1em8B  c.126.1.1 * 2e-07 12.9 %
:HMM:SCOP  3->79 2eyqA1 b.34.18.1 * 2.5e-14 28.9 %
:RPS:PFM   14->61 PF02559 * CarD_TRCF 2e-07 43.8 %
:HMM:PFM   14->123 PF02559 * CarD_TRCF 1.1e-22 37.1 97/98  
:HMM:PFM   90->167 PF04031 * Las1 0.00039 24.3 70/154  
:BLT:SWISS 14->160 YDEB_BACSU 1e-10 23.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88480.1 GT:GENE AAK88480.1 GT:PRODUCT transcriptional regulator, CarD family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2765656..2766225) GB:FROM 2765656 GB:TO 2766225 GB:DIRECTION - GB:PRODUCT transcriptional regulator, CarD family GB:PROTEIN_ID AAK88480.1 GB:DB_XREF GI:15157987 LENGTH 189 SQ:AASEQ MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKTVEEDDSQDEAA GT:EXON 1|1-189:0| BL:SWS:NREP 1 BL:SWS:REP 14->160|YDEB_BACSU|1e-10|23.1|147/153| RP:PFM:NREP 1 RP:PFM:REP 14->61|PF02559|2e-07|43.8|48/100|CarD_TRCF| HM:PFM:NREP 2 HM:PFM:REP 14->123|PF02559|1.1e-22|37.1|97/98|CarD_TRCF| HM:PFM:REP 90->167|PF04031|0.00039|24.3|70/154|Las1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| RP:SCP:NREP 2 RP:SCP:REP 15->61|2eyqA1|5e-04|30.4|46/80|b.34.18.1| RP:SCP:REP 45->107|1em8B|2e-07|12.9|62/110|c.126.1.1| HM:SCP:REP 3->79|2eyqA1|2.5e-14|28.9|76/0|b.34.18.1|1/1|CarD-like| OP:NHOMO 284 OP:NHOMOORG 266 OP:PATTERN -------------------------------------------------------------------- -111111111111111111-1111111111111111112211111121122111111111111111111111111111------------------------------------------------------------------------------------------------------------11-----1111-1112111112121--1-111-------------1-------------------------------------------------------------------------------------------111-1-------1--1---------1111--1133121-1111---1------111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111----------111111111111111----111111-----------------------------------------------------------------------11111111111111--------1-22222111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111-1---1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-13, 170-189| PSIPRED ccccccccccccccccccEEEEccccEEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEcccHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHcccccc //