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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88489.2
DDBJ      :             carboxy-terminal protease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  714/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
c.14.1
:442 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->374 1fcfA PDBj 1e-37 30.1 %
:RPS:PDB   131->394 3djaA PDBj 8e-36 17.0 %
:RPS:SCOP  102->371 1j7xA  c.14.1.2 * 1e-66 20.1 %
:HMM:SCOP  37->369 1fc6A4 c.14.1.2 * 3.8e-88 50.2 %
:RPS:PFM   197->362 PF03572 * Peptidase_S41 2e-32 53.1 %
:RPS:PFM   361->438 PF06030 * DUF916 9e-05 29.5 %
:HMM:PFM   197->364 PF03572 * Peptidase_S41 3e-59 51.2 162/167  
:HMM:PFM   97->166 PF00595 * PDZ 9.2e-14 24.6 69/81  
:BLT:SWISS 1->436 CTPA_BARBK e-157 65.0 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88489.2 GT:GENE AAK88489.2 GT:PRODUCT carboxy-terminal protease GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2778850..2780178) GB:FROM 2778850 GB:TO 2780178 GB:DIRECTION - GB:PRODUCT carboxy-terminal protease GB:PROTEIN_ID AAK88489.2 GB:DB_XREF GI:159140625 LENGTH 442 SQ:AASEQ MIRKVSLLLIGGLMGATAMSVIYSASMPAQAAGPSTYKELSIFGDVFERVRAQYVTPPDDEKLVENAINGMLSSLDPHSSFMNAKDANDMRTQTKGEFGGLGIEVTMENELVKVISPMDDTPASRAGILAGDYISEIDGTPVRGLKLEQAVEKMRGAVKTPIKLTVIRKGADKPLEFTVVRDVIAVRAVKSRVEGDNVGYLRVISFTEKTYDDLEKAIKKIKADVPADKLKGYVLDLRLNPGGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATAGDLTDGKPVIVLVNGGSASASEIVAGALQDLRRATVVGTRSFGKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGIEPDIKVEQPLPAELQGRVTAEGESSLSGHIKGQSETDEGSGSSAYVPPEAKDDIQLNYALDLLRGAKTDPSFPPNPDKAVVNKQ GT:EXON 1|1-442:0| BL:SWS:NREP 1 BL:SWS:REP 1->436|CTPA_BARBK|e-157|65.0|432/434| TM:NTM 1 TM:REGION 5->27| BL:PDB:NREP 1 BL:PDB:REP 27->374|1fcfA|1e-37|30.1|342/387| RP:PDB:NREP 1 RP:PDB:REP 131->394|3djaA|8e-36|17.0|264/521| RP:PFM:NREP 2 RP:PFM:REP 197->362|PF03572|2e-32|53.1|162/169|Peptidase_S41| RP:PFM:REP 361->438|PF06030|9e-05|29.5|78/122|DUF916| HM:PFM:NREP 2 HM:PFM:REP 197->364|PF03572|3e-59|51.2|162/167|Peptidase_S41| HM:PFM:REP 97->166|PF00595|9.2e-14|24.6|69/81|PDZ| GO:PFM:NREP 2 GO:PFM GO:0006508|"GO:proteolysis"|PF03572|IPR005151| GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF03572|IPR005151| RP:SCP:NREP 1 RP:SCP:REP 102->371|1j7xA|1e-66|20.1|268/302|c.14.1.2| HM:SCP:REP 37->369|1fc6A4|3.8e-88|50.2|253/0|c.14.1.2|1/1|ClpP/crotonase| OP:NHOMO 1137 OP:NHOMOORG 737 OP:PATTERN -------------------------------------------------------------------- 225-------------------------------------1-----1--------------------111---------111111111333333341--12433333433111111111111112333443234334444411121634633322332222223334444322222222222222111111-12111111111111111112222111121111111111122111111111111111111111---11--1-111--11--1--------------------------------------------------22111111111111121221111223112112122222312111122211313111111111112221112111111111111112-11111112111-2111121222221111111111111112222222222222122------------1111111111111----1111111111112222111111111111111122111111111111111111111112111111111111111112232312121111111122212222122222721111111111111111111111111111111122111212222221222222222222--21231------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--22111111111122221111-111111111122222222222222222222222222222---------11111111111111122222222223444111144222211111111-1--------------------------1111111111131 ------------------------------------------------------------------------------------------------------------6------------------------------------------------------1---------1-3551E222355213-44351---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 385 STR:RPRED 87.1 SQ:SECSTR ##########################HHHHHHHHHHcccTTGGGccHHHHHHHHHHccccHHHHHcccccGGGcHHHHHHHcTTcccEEEEEEEEcccccccEEEEcccccEEEEEEcTTcHHHHHTccTEEccccTTcccccEEEEEcccccGGGTTccTTcccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccEEccEEEcccHHHHHHHHHHHHHcTTcccHHHHHHHHccETTEEccHHHHHHHHHTTHHHHHHHTTcccccccccGGGccEEcccccEEEEEcTTccTHHHHHHHHHHHTTcEEEEEcccccccccEEEEcccccccEEEEcEEEEcTTccccTTTcccccEEccccHHHHHTTcHHHHHHHHHHHHHHTTcccHHHHHTTcccccccccc############################### DISOP:02AL 1-1,390-404,428-428,441-443| PSIPRED ccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEEEEEEccEEEEEEEccccHHHHcccccccEEEEEccEEcccccHHHHHHHHccccccEEEEEEEEcccccEEEEcccccEEcccccccccccccccEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccEEEEcccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEcccccccEEEEEEEcccccEEEEEEEEEEcccccEEcccccccEEEcccccHHHHHcccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccc //