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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : AAK88490.2
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  223/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.18.1b.84.3
:465 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   311->418 2hsiB PDBj 4e-04 28.6 %
:RPS:PDB   52->262 3dmqA PDBj 3e-04 16.1 %
:RPS:PDB   328->455 2b13A PDBj 3e-15 20.5 %
:RPS:SCOP  360->465 2vmgA1  b.18.1.33 * 1e-15 14.1 %
:HMM:SCOP  255->452 1qwyA_ b.84.3.2 * 4.5e-19 28.3 %
:RPS:PFM   49->142 PF08317 * Spc7 8e-04 21.6 %
:RPS:PFM   346->444 PF01551 * Peptidase_M23 2e-12 37.8 %
:HMM:PFM   346->448 PF01551 * Peptidase_M23 6.8e-18 37.2 94/96  
:HMM:PFM   36->149 PF04156 * IncA 1.1e-05 22.4 107/191  
:BLT:SWISS 44->452 YIBP_ECOLI 8e-14 31.2 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88490.2 GT:GENE AAK88490.2 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2780168..2781565) GB:FROM 2780168 GB:TO 2781565 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAK88490.2 GB:DB_XREF GI:159140626 LENGTH 465 SQ:AASEQ MDTEPQRQRHAALAGAVIAAFVLGGSPVHARDDAGAVPAATDDSSPAALQALEKRRDQNRQDLEELVDSIGLSEDKTRTLEESIASLNQDSARIREELIASAARRKALEAKISDGEDRLAKLSVREDDVKASLRERRGVLAEVLAALQRMGRNPPPALLVSPEDALASVRSAILLGAVVPGIRGETDKLVAALKELTDVRQAIAREKDDLTGMMTASLEEEKRLDLLIAENDRKNTQTAAQLEAERKRSEELAGKATSLEGLVSSLEGEITSVREAMEKARAEEQRLARLSEAEREKERAAAEAGMPDKNRIAPAYPFASLKGKLELPVTGEVLRRFGDADGTGHFSKGIVVASGPEAIVTAPADGFVVFAGDFRSYGRMIILNTGNGYHVVMTGMDNVRTRQGMFVFSGEPIASMGAKRVASAAALALETDRPTLYIEFRKDGVPVDSQPWWTAKNTGRAHNDS GT:EXON 1|1-465:0| BL:SWS:NREP 1 BL:SWS:REP 44->452|YIBP_ECOLI|8e-14|31.2|375/419| COIL:NAA 116 COIL:NSEG 2 COIL:REGION 71->123| COIL:REGION 240->302| SEG 11->25|aalagaviaafvlgg| SEG 278->304|ekaraeeqrlarlseaerekeraaaea| SEG 422->429|asaaalal| BL:PDB:NREP 1 BL:PDB:REP 311->418|2hsiB|4e-04|28.6|98/228| RP:PDB:NREP 2 RP:PDB:REP 52->262|3dmqA|3e-04|16.1|205/938| RP:PDB:REP 328->455|2b13A|3e-15|20.5|117/131| RP:PFM:NREP 2 RP:PFM:REP 49->142|PF08317|8e-04|21.6|88/325|Spc7| RP:PFM:REP 346->444|PF01551|2e-12|37.8|90/96|Peptidase_M23| HM:PFM:NREP 2 HM:PFM:REP 346->448|PF01551|6.8e-18|37.2|94/96|Peptidase_M23| HM:PFM:REP 36->149|PF04156|1.1e-05|22.4|107/191|IncA| RP:SCP:NREP 1 RP:SCP:REP 360->465|2vmgA1|1e-15|14.1|99/145|b.18.1.33| HM:SCP:REP 255->452|1qwyA_|4.5e-19|28.3|187/270|b.84.3.2|1/1|Duplicated hybrid motif| OP:NHOMO 226 OP:NHOMOORG 224 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111-1111------------------------------1111-------------------------------1----------------1-111111111-------111121---1-----------1-11111-111-1---------------------------------1-11----------------------------1-1------111--1-1111111111-1111111111111111111111-----1111111111111111-11-1111--1---------------11111----1--11-1-1-------1-------------1-11-11211111111111------------------------1111111111--------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 369 STR:RPRED 79.4 SQ:SECSTR ###########################################HHHHHHHHccccccccccccccccEEccHHHHHTccccccccTTHHHHHHTHHHHccTTcEEccccccTTccccccccccEEccEEEEccccGGGcTTTTcccccccccccHHHHTTcccccccccccGGGTTTTHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH##HHHHHHHHHHHHHHHTTcccccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH#####################################THHHHHHHHHHHHccccccccccHHHHTccEEETccEEccccEEEEccTTcEEEccccEEEEEEEccccccEEEEEEETTccEEEEEEEccccccTTcEEcTTcEEEEccc#####cccccccccccEEEEEEEEccGEEccHHHHccc######### DISOP:02AL 1-9,46-69,125-126,128-134,136-136,217-323,455-466| PSIPRED ccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccEEEccccccEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEEccccccccccEEccccEEEEEccccccccccccccccccEEEEEEEEccEEccHHHHccHHccccccccc //