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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : aarF
DDBJ      :aarF         ubiquinone biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  606/915 : Eukaryota  174/199 : Viruses  1/175   --->[See Alignment]
d.144.1
:524 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   243->316 2fumB PDBj 4e-06 31.9 %
:BLT:PDB   288->378 1ua2A PDBj 8e-04 28.6 %
:RPS:PDB   54->421 3dnuA PDBj 4e-32 9.3 %
:RPS:SCOP  122->369 1zylA1  d.144.1.6 * 3e-15 11.0 %
:HMM:SCOP  54->436 1e8yA4 d.144.1.4 * 4.2e-23 21.7 %
:RPS:PFM   115->233 PF03109 * ABC1 1e-12 40.9 %
:HMM:PFM   114->233 PF03109 * ABC1 4.5e-32 38.8 116/119  
:HMM:PFM   208->310 PF01163 * RIO1 8.5e-08 26.9 93/187  
:BLT:SWISS 9->483 UBIB_MARAV 2e-82 36.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86135.1 GT:GENE aarF GT:PRODUCT ubiquinone biosynthesis protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(312080..313654) GB:FROM 312080 GB:TO 313654 GB:DIRECTION - GB:GENE aarF GB:PRODUCT ubiquinone biosynthesis protein GB:PROTEIN_ID AAK86135.1 GB:DB_XREF GI:15155222 GB:GENE:GENE aarF LENGTH 524 SQ:AASEQ MSTLGAYFRLARVGWVLVREGVVLALPSDDLPAPAQLLKAALKPFARSKAKRAQRSDRLAVAVERLGPSYVKMGQFLATRPDVVGADFADDLASLQDRMAFFPAAAAKANIEGSLGRSISELYREFGDPIAAASIAQVHPAMVDTPKGPRKVAVKVIRPGVRQRFQNDLEAMYLIADLQQRFVRSARRLRPVEVTRTLEQTTKIEMDLRLEAAALSELAENTRQDPGFRVPEVDWERTGRDVVTMEWIDGVKMSDIEGLKAAGHDLNKLADTLIQSFLRHTLRDGFFHADMHPGNLFVDAKGEIVAVDMGIAGRLGKKERRFLAEILYGFITRDYMRVAEVHFEAGYVPGHHDKASFAQAIRAIGEPIHGQPAETISMGKLLTLLFEVTELFDMETRPELVMLQKTMVVVEGVSRMLNPRFNMWKAADPVVGGWIRDNLGPKRIATDLKDGVKAALKLAEAVPEIAAKTEKLHSELMYMSENGLRFDAQTAEAIGKAEARHTKWGRIALWVIALTLLYIAIRIS GT:EXON 1|1-524:0| BL:SWS:NREP 1 BL:SWS:REP 9->483|UBIB_MARAV|2e-82|36.8|465/547| TM:NTM 2 TM:REGION 18->40| TM:REGION 504->524| SEG 31->44|lpapaqllkaalkp| SEG 100->109|affpaaaaka| SEG 208->220|lrleaaalselae| SEG 381->392|lltllfevtelf| BL:PDB:NREP 2 BL:PDB:REP 243->316|2fumB|4e-06|31.9|72/262| BL:PDB:REP 288->378|1ua2A|8e-04|28.6|91/286| RP:PDB:NREP 1 RP:PDB:REP 54->421|3dnuA|4e-32|9.3|335/401| RP:PFM:NREP 1 RP:PFM:REP 115->233|PF03109|1e-12|40.9|115/119|ABC1| HM:PFM:NREP 2 HM:PFM:REP 114->233|PF03109|4.5e-32|38.8|116/119|ABC1| HM:PFM:REP 208->310|PF01163|8.5e-08|26.9|93/187|RIO1| RP:SCP:NREP 1 RP:SCP:REP 122->369|1zylA1|3e-15|11.0|245/325|d.144.1.6| HM:SCP:REP 54->436|1e8yA4|4.2e-23|21.7|345/0|d.144.1.4|1/1|Protein kinase-like (PK-like)| OP:NHOMO 1701 OP:NHOMOORG 814 OP:PATTERN ------1111111111--------31121112111--------1-11--2221--------111--11 --121---------A2222-2222322222222224332211-111---1--11-111--211-2---12-1111111-1211--111-----------1--12--111---------------------------22222---114665555443333344455444445333333333333-------11-------12----111-11-------1211111-------1---------------------------1---1111------------------------------------------------111----11-1-1111111111-122-111--11---11222---311222121--1112311211111211111111111111111111111-333333332111111111111111231111111211211--------1--1112211111111111111111111111111111131311111111111111111111221111111221111112211113123321111122122211111112221111-2211---2-----131211111111123-21-------------------11-1111112122111121111112111111111111--11111------11111111111111111-11111111111111111111111111111111111111111112111111111111111111111111111111111124311111---1----1111333333322311111111111-1112111111111111111111111111111333333333311111111222222-----------------------------------------------1- --11233-843-1231---22232222111222222-212122222--2332321222122211211122122211111122213211-221--1-1112112332-4B543434431-2133266141CM3-435-12121333-3-2131-722233--22323-223311338BBE*EECBALBEJ-KHEE3222I ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 378 STR:RPRED 72.1 SQ:SECSTR #####################################################cccHHHHHHHHTTccccHHHHHHHHHHHTcccccHHHHHHHHTTcccTTE#######HEEETTEEEETTccccEEEccHHHHHHHHHTTTccccEccccccccccccEEEEEETTEEEEEcTTccccEEEEccccTTHHHHETTEEHHHHHHHHHHTTcccccEEEEEETTEEEEEEEcccEEEcTTHHTTccGGGccGGGTcccHHHHHHHTcTTHHHHHHHHHHHHHHHHTTcccccGGGcEEGcEEEcccccccccGGGTTTccccGGGcEEEEEEETTEEEEEGGcGGGccHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGccTTccHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHH###################################################################################### DISOP:02AL 1-4, 476-502| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcHHHccccHHEEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEEccccHHHEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //