[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : agrR
DDBJ      :agrR         transcriptional regulator, LuxR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  18/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.6
:251 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   186->243 2q0oA PDBj 4e-06 43.1 %
:RPS:PDB   39->145 1bgjA PDBj 6e-04 18.7 %
:RPS:PDB   156->248 3cloA PDBj 1e-15 24.7 %
:RPS:SCOP  171->250 1p4wA  a.4.6.2 * 1e-13 26.2 %
:HMM:SCOP  168->250 1p4wA_ a.4.6.2 * 5.9e-16 33.7 %
:HMM:PFM   188->244 PF00196 * GerE 2.3e-14 35.1 57/58  
:HMM:PFM   157->190 PF07478 * Dala_Dala_lig_C 0.0004 26.5 34/203  
:BLT:SWISS 133->250 AHYR_AERSA 3e-12 33.9 %
:PROS 204->231|PS00622|HTH_LUXR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86340.1 GT:GENE agrR GT:PRODUCT transcriptional regulator, LuxR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 514901..515656 GB:FROM 514901 GB:TO 515656 GB:DIRECTION + GB:GENE agrR GB:PRODUCT transcriptional regulator, LuxR family GB:PROTEIN_ID AAK86340.1 GB:DB_XREF GI:15155462 GB:GENE:GENE agrR LENGTH 251 SQ:AASEQ MVGRMVQTKDNEGTGRMGMFYRSPVVTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKMTCELENWGMNAAEQSAQFIRAVGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALLRRIENDTLPYAGLALPVRLGTIGNGYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIH GT:EXON 1|1-251:0| BL:SWS:NREP 1 BL:SWS:REP 133->250|AHYR_AERSA|3e-12|33.9|118/260| PROS 204->231|PS00622|HTH_LUXR_1|PDOC00542| BL:PDB:NREP 1 BL:PDB:REP 186->243|2q0oA|4e-06|43.1|58/235| RP:PDB:NREP 2 RP:PDB:REP 39->145|1bgjA|6e-04|18.7|107/391| RP:PDB:REP 156->248|3cloA|1e-15|24.7|93/249| HM:PFM:NREP 2 HM:PFM:REP 188->244|PF00196|2.3e-14|35.1|57/58|GerE| HM:PFM:REP 157->190|PF07478|0.0004|26.5|34/203|Dala_Dala_lig_C| RP:SCP:NREP 1 RP:SCP:REP 171->250|1p4wA|1e-13|26.2|80/87|a.4.6.2| HM:SCP:REP 168->250|1p4wA_|5.9e-16|33.7|83/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 47 OP:NHOMOORG 18 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------2-1233333344344---------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------12------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 212 STR:RPRED 84.5 SQ:SECSTR ######################################EEccEETTEEEcGGGTEEccGGGccHHHHHHHHHHHHHHHHHHHHTcccGGGGGGHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHTTcHHHHHHHHHHEEEEEEEEEEEccccccccccccEEEETTTEEEEcccHHHHTTcccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccHHHHHHHHHHTcTT# DISOP:02AL 1-7, 176-189| PSIPRED ccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEcHHHHHHHHHcccHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccc //