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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : alaS.2
DDBJ      :alaS         alanyl-tRNA synthetase
Swiss-Prot:SYA_AGRT5    RecName: Full=Alanyl-tRNA synthetase;         EC=6.1.1.7;AltName: Full=Alanine--tRNA ligase;         Short=AlaRS;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
a.203.1b.43.3d.104.1d.206.1d.67.1
:887 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->459 1yfrA PDBj e-121 50.0 %
:BLT:PDB   490->706 2e1bA PDBj 7e-09 32.6 %
:RPS:PDB   1->430 2cvsA PDBj 9e-74 10.4 %
:RPS:PDB   453->707 2e1bA PDBj 7e-46 31.0 %
:RPS:PDB   683->868 3c9iF PDBj 2e-12 8.7 %
:RPS:SCOP  4->245 1riqA2  d.104.1.1 * e-125 56.2 %
:RPS:SCOP  246->462 1riqA1  a.203.1.1 * 4e-65 37.2 %
:RPS:SCOP  453->552 2e1bA1  b.43.3.6 * 4e-17 28.2 %
:RPS:SCOP  551->732 1nyqA3  d.67.1.1 * 3e-40 18.9 %
:RPS:SCOP  793->838 1jrmA  d.206.1.1 * 2e-04 15.2 %
:HMM:SCOP  1->245 1riqA2 d.104.1.1 * 9.9e-109 65.7 %
:HMM:SCOP  246->463 1riqA1 a.203.1.1 * 1.4e-61 43.8 %
:HMM:SCOP  552->733 1nyrA3 d.67.1.1 * 1.4e-50 48.5 %
:RPS:PFM   6->556 PF01411 * tRNA-synt_2c e-176 55.6 %
:RPS:PFM   653->705 PF07973 * tRNA_SAD 1e-06 51.2 %
:HMM:PFM   6->556 PF01411 * tRNA-synt_2c 1.5e-226 53.1 548/551  
:HMM:PFM   653->706 PF07973 * tRNA_SAD 2e-19 59.1 44/44  
:HMM:PFM   812->881 PF02272 * DHHA1 5.3e-17 41.5 65/68  
:BLT:SWISS 1->872 SYA_AGRT5 0.0 100.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87639.2 GT:GENE alaS.2 GT:PRODUCT alanyl-tRNA synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1851032..1853695) GB:FROM 1851032 GB:TO 1853695 GB:DIRECTION - GB:GENE alaS GB:PRODUCT alanyl-tRNA synthetase GB:PROTEIN_ID AAK87639.2 GB:DB_XREF GI:159140236 GB:GENE:GENE alaS LENGTH 887 SQ:AASEQ MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYSTAASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGIDRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQGKHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGYVLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFRKTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREIGVDISGFTDAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYDTESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAGTFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDAIAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGESAVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLERELADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLLIAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTKAKEAIEAVAAALAA GT:EXON 1|1-887:0| SW:ID SYA_AGRT5 SW:DE RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1.7;AltName: Full=Alanine--tRNA ligase; Short=AlaRS; SW:GN Name=alaS; OrderedLocusNames=Atu1873; ORFNames=AGR_C_3437; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; Zinc;Zinc-finger. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->872|SYA_AGRT5|0.0|100.0|872/887| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| COIL:NAA 30 COIL:NSEG 1 COIL:REGION 736->765| SEG 185->196|ggppgspeedgd| SEG 743->756|egllderkklerel| SEG 853->859|ggkgggg| SEG 873->886|kakeaieavaaala| BL:PDB:NREP 2 BL:PDB:REP 5->459|1yfrA|e-121|50.0|436/448| BL:PDB:REP 490->706|2e1bA|7e-09|32.6|181/216| RP:PDB:NREP 3 RP:PDB:REP 1->430|2cvsA|9e-74|10.4|422/657| RP:PDB:REP 453->707|2e1bA|7e-46|31.0|210/216| RP:PDB:REP 683->868|3c9iF|2e-12|8.7|183/221| RP:PFM:NREP 2 RP:PFM:REP 6->556|PF01411|e-176|55.6|543/546|tRNA-synt_2c| RP:PFM:REP 653->705|PF07973|1e-06|51.2|43/44|tRNA_SAD| HM:PFM:NREP 3 HM:PFM:REP 6->556|PF01411|1.5e-226|53.1|548/551|tRNA-synt_2c| HM:PFM:REP 653->706|PF07973|2e-19|59.1|44/44|tRNA_SAD| HM:PFM:REP 812->881|PF02272|5.3e-17|41.5|65/68|DHHA1| GO:PFM:NREP 11 GO:PFM GO:0000166|"GO:nucleotide binding"|PF01411|IPR018164| GO:PFM GO:0004813|"GO:alanine-tRNA ligase activity"|PF01411|IPR018164| GO:PFM GO:0005524|"GO:ATP binding"|PF01411|IPR018164| GO:PFM GO:0005737|"GO:cytoplasm"|PF01411|IPR018164| GO:PFM GO:0006412|"GO:translation"|PF01411|IPR018164| GO:PFM GO:0006419|"GO:alanyl-tRNA aminoacylation"|PF01411|IPR018164| GO:PFM GO:0005524|"GO:ATP binding"|PF07973|IPR012947| GO:PFM GO:0005737|"GO:cytoplasm"|PF07973|IPR012947| GO:PFM GO:0006412|"GO:translation"|PF07973|IPR012947| GO:PFM GO:0016876|"GO:ligase activity, forming aminoacyl-tRNA and related compounds"|PF07973|IPR012947| GO:PFM GO:0043039|"GO:tRNA aminoacylation"|PF07973|IPR012947| RP:SCP:NREP 5 RP:SCP:REP 4->245|1riqA2|e-125|56.2|233/236|d.104.1.1| RP:SCP:REP 246->462|1riqA1|4e-65|37.2|207/212|a.203.1.1| RP:SCP:REP 453->552|2e1bA1|4e-17|28.2|85/87|b.43.3.6| RP:SCP:REP 551->732|1nyqA3|3e-40|18.9|169/179|d.67.1.1| RP:SCP:REP 793->838|1jrmA|2e-04|15.2|46/104|d.206.1.1| HM:SCP:REP 1->245|1riqA2|9.9e-109|65.7|233/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 246->463|1riqA1|1.4e-61|43.8|217/0|a.203.1.1|1/1|Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)| HM:SCP:REP 552->733|1nyrA3|1.4e-50|48.5|169/179|d.67.1.1|1/1|ThrRS/AlaRS common domain|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cccEEEEcTTcccTTccccccccccHHHHHHHHHHHHHHcccEEETHHHHHTTHcTcccccccccccccccEEETEEEEEcHHHHHHHHTTcEEEEcGGccHHHHHHHHHHHHcEEEEHHHHHHHHHHHHHHHccHHHHTcTTTTTcccccccTTccccccccTTEccccccccEEcHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccEEEEEcHHHHHHHTTccTTcHHHHHHHHHHHHHHHHHHHHcccTTcTTcGGGGTccTGGGGTccccccccHHHHHHHHHHHcccccccccccccTTHHHHTTcccccccccccEEcccEEcHHHHHHHHHHTTcccHHHHHHHHHTTTccTTcTTccHHHHHHTccTTcccHHHHHHHHHHHHTTccccccccccHHHHHHHHHTTccccEEEEEEEEccGGGGGccccccTTccTTccHHHHHHHHTTEEEEcccccccccccccccccccccTTcccccEEETTcccEEEEEEEEccTTcccEEEEccGcGGccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEccccccEEEEEEEccccGGcGGHHHHHHHHHHHHHHcccEEEEEccccccccEEcccccTTTcTcccEEEEETccEEEEEEEETccEEcccccccccGGGTccEEEEEEEEEETTEEEEEETHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH#HHHHHHHHHHHHHHHHHHHHHHHHHH#HHHcccccccccccccccEEETTEEEEccccccccccccccccccccc################### DISOP:02AL 1-2,372-381,424-439| PSIPRED cccHHHHHHHHHHHHHHcccEEcccccccccccccEEEEEccccccccccccccccccccccccHHHHHcccccccHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHEEEEEccccHHHHHHHHHHccccHHHEEEcccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccEEEEEEccEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHccccEEEEccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHcccHHHcccccccEEEEEEcccccccEEcccccEEccccccccccccccccEEEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccHHHHccccHHHHHHHHHHHHccccccccHHccccccccHHHHHHHHHHHHHHHcc //