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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : argS
DDBJ      :argS         arginyl-tRNA synthetase
Swiss-Prot:SYR_AGRT5    RecName: Full=Arginyl-tRNA synthetase;         EC=6.1.1.19;AltName: Full=Arginine--tRNA ligase;         Short=ArgRS;

Homologs  Archaea  67/68 : Bacteria  875/915 : Eukaryota  135/199 : Viruses  0/175   --->[See Alignment]
a.27.1c.26.1d.67.2
:585 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->115 3gdzC PDBj 1e-05 39.3 %
:BLT:PDB   126->584 3fnrA PDBj 2e-66 34.4 %
:RPS:PDB   1->584 1bs2A PDBj 3e-56 19.5 %
:RPS:SCOP  11->94 1iq0A3  d.67.2.1 * 1e-15 24.7 %
:RPS:SCOP  116->464 1bs2A2  c.26.1.1 * 2e-61 21.4 %
:RPS:SCOP  453->584 1iq0A1  a.27.1.1 * 2e-32 37.2 %
:HMM:SCOP  1->114 1bs2A3 d.67.2.1 * 4.8e-25 38.7 %
:HMM:SCOP  115->466 1bs2A2 c.26.1.1 * 2.2e-81 37.2 %
:HMM:SCOP  448->584 1iq0A1 a.27.1.1 * 3.6e-37 42.9 %
:RPS:PFM   33->91 PF03485 * Arg_tRNA_synt_N 4e-14 54.2 %
:RPS:PFM   103->462 PF00750 * tRNA-synt_1d 2e-53 45.4 %
:RPS:PFM   454->584 PF05746 * DALR_1 4e-22 48.3 %
:HMM:PFM   105->417 PF00750 * tRNA-synt_1d 1.7e-59 31.4 293/354  
:HMM:PFM   454->584 PF05746 * DALR_1 1.9e-37 48.7 119/119  
:HMM:PFM   9->93 PF03485 * Arg_tRNA_synt_N 1.1e-23 39.7 78/83  
:HMM:PFM   398->442 PF09334 * tRNA-synt_1g 2.8e-05 34.1 44/391  
:BLT:SWISS 1->585 SYR_AGRT5 0.0 100.0 %
:PROS 133->142|PS00178|AA_TRNA_LIGASE_I

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87484.1 GT:GENE argS GT:PRODUCT arginyl-tRNA synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1697660..1699417) GB:FROM 1697660 GB:TO 1699417 GB:DIRECTION - GB:GENE argS GB:PRODUCT arginyl-tRNA synthetase GB:PROTEIN_ID AAK87484.1 GB:DB_XREF GI:15156807 GB:GENE:GENE argS LENGTH 585 SQ:AASEQ MNIFADFDTRIKNALETLDLVKENREKVDFSRITVESPRDLSHGDVATNAAMVLAKPLGTNPRALAELLVPALQADGDVDGVNVAGPGFINLKVSVGYWQRLLADMIGQGVDFGRSTVGAGQKINVEYVSANPTGPMHVGHCRGAVVGDTLANLLAFAGYGVTKEYYINDAGSQIDVLARSVFLRYREALGEDIGSIPSGLYPGDYLVPVGQALADEYGIKLRAMPEEKWLPIVKDKAIDAMMVMIREDLALLNVRHDVFFSERTLHEGNGGPILSAINDLTFKGHVYKGTLPPPKGELPDDWEDREQTLFRSTEVGDDMDRALMKSDGSYTYFAADVAYFKNKFDRGFSEMIYVLGADHGGYVKRLEAVARAVSEGKSKLTVLLCQLVKLFRDGEPVKMSKRSGDFVTLRDVVDEVGRDPVRFMMLYRKNSEPLDFDFAKVTEQSKDNPVFYVQYAHARCKSIFRQAQEAFPGLAPSAEDMAASVALISDINELQLVAKLAEYPRLIESAALSHEPHRLAFYLYDLAGSFHGHWNKGKDHQELRFINDKNRELSIARLGLVNAVANVLKSGLTLLGADAPDEMR GT:EXON 1|1-585:0| SW:ID SYR_AGRT5 SW:DE RecName: Full=Arginyl-tRNA synthetase; EC=6.1.1.19;AltName: Full=Arginine--tRNA ligase; Short=ArgRS; SW:GN Name=argS; OrderedLocusNames=Atu1711; ORFNames=AGR_C_3144; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->585|SYR_AGRT5|0.0|100.0|585/585| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 133->142|PS00178|AA_TRNA_LIGASE_I|PDOC00161| BL:PDB:NREP 2 BL:PDB:REP 26->115|3gdzC|1e-05|39.3|84/103| BL:PDB:REP 126->584|3fnrA|2e-66|34.4|418/449| RP:PDB:NREP 1 RP:PDB:REP 1->584|1bs2A|3e-56|19.5|555/603| RP:PFM:NREP 3 RP:PFM:REP 33->91|PF03485|4e-14|54.2|59/85|Arg_tRNA_synt_N| RP:PFM:REP 103->462|PF00750|2e-53|45.4|328/350|tRNA-synt_1d| RP:PFM:REP 454->584|PF05746|4e-22|48.3|118/118|DALR_1| HM:PFM:NREP 4 HM:PFM:REP 105->417|PF00750|1.7e-59|31.4|293/354|tRNA-synt_1d| HM:PFM:REP 454->584|PF05746|1.9e-37|48.7|119/119|DALR_1| HM:PFM:REP 9->93|PF03485|1.1e-23|39.7|78/83|Arg_tRNA_synt_N| HM:PFM:REP 398->442|PF09334|2.8e-05|34.1|44/391|tRNA-synt_1g| GO:PFM:NREP 15 GO:PFM GO:0000166|"GO:nucleotide binding"|PF03485|IPR005148| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF03485|IPR005148| GO:PFM GO:0005524|"GO:ATP binding"|PF03485|IPR005148| GO:PFM GO:0005737|"GO:cytoplasm"|PF03485|IPR005148| GO:PFM GO:0006412|"GO:translation"|PF03485|IPR005148| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF03485|IPR005148| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00750|IPR015945| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF00750|IPR015945| GO:PFM GO:0005524|"GO:ATP binding"|PF00750|IPR015945| GO:PFM GO:0005737|"GO:cytoplasm"|PF00750|IPR015945| GO:PFM GO:0006412|"GO:translation"|PF00750|IPR015945| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF00750|IPR015945| GO:PFM GO:0004814|"GO:arginine-tRNA ligase activity"|PF05746|IPR008909| GO:PFM GO:0005524|"GO:ATP binding"|PF05746|IPR008909| GO:PFM GO:0006420|"GO:arginyl-tRNA aminoacylation"|PF05746|IPR008909| RP:SCP:NREP 3 RP:SCP:REP 11->94|1iq0A3|1e-15|24.7|77/96|d.67.2.1| RP:SCP:REP 116->464|1bs2A2|2e-61|21.4|323/348|c.26.1.1| RP:SCP:REP 453->584|1iq0A1|2e-32|37.2|121/126|a.27.1.1| HM:SCP:REP 1->114|1bs2A3|4.8e-25|38.7|106/131|d.67.2.1|1/1|Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain| HM:SCP:REP 115->466|1bs2A2|2.2e-81|37.2|323/348|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 448->584|1iq0A1|3.6e-37|42.9|126/126|a.27.1.1|1/1|Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases| OP:NHOMO 1152 OP:NHOMOORG 1077 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111-11 11-121111111111-111-1111111111111111111111211111111111211111211111111111111111111111111111-1-111------1-11111111111111111111111111111111-111111121111111111111-1111111111111-1111111111111--111-1122222122222222221111122211111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111112111111111111111111111-11112111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111-11111---11111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111----1-111-----1-11111111111111111111111111111111 ----1-1-21--112--1------------1--211--111---------111-111111-1111111112111111-2211111111--21--11----11-212-1312-211121-1--1111-11161-1111-1-1-11111---1--1111121321211-112112121112A222111111-221222112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 582 STR:RPRED 99.5 SQ:SECSTR TcHHHHHHHHHHHHHH##HHccccHHHHHHHHHHccccccGGGccEEEEGGGGccTHHTccHHHHHHHHHHHcccTTTEEEEEEETTEEEEEEcHHHHHHHHHHHHHHHGGGTTccccccccEEEEEcccccTTccccHHHHHHHHHHHHHHHHHHHTTcEEEEEcccccccHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccTTTcHHHHHHHHHTTcccccTTTTTTHHHHHHHHHHHHHHHHTTcccccccccTTccHHHHHHHHHHHHHHTHTTcccccccTTcEEEEGGGTcTTccEEEEEETTTEEcHHHHHHHHHHHHHHHcccEEEEEccGGGHHHHHHHHHHHHHTccGGTTcccccHHHHHHHHHHHHHHHHHHcTTTccccHHHHHHHHHHHHHHHHcccTTccEEccHHHHHccccccHHcHHHHHHHHHHHHHccccTTHHHcccccHHHTccGGGcccHHHHHHHHHHHTHHHHHHHHHHHTcTHHHHHHHHHHHHHHHHHHHHHcHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHHHHHHTccccccc# DISOP:02AL 398-400| PSIPRED ccHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccEEccHHHHHHHHHcccHHHHHHHHHHHccccccccccEEccccEEEEEEcHHHHHHHHHHHHHccHHccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcHHHHHHHHccHHHHHHHHHHHcccEEEccccccccHHHHHccccccEEEEcccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEcccEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccc //