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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : asd
DDBJ      :asd          aspartate-semialdehyde dehydrogenase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  840/915 : Eukaryota  97/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.81.1
:344 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->332 2qz9B PDBj 2e-95 53.5 %
:RPS:PDB   4->331 1brmB PDBj 6e-49 22.6 %
:RPS:SCOP  2->157 2gyyA1  c.2.1.3 * 1e-36 37.6 %
:RPS:SCOP  129->319 1brmA2  d.81.1.1 * 3e-68 28.9 %
:HMM:SCOP  2->156 2g17A1 c.2.1.3 * 5e-52 46.7 %
:HMM:SCOP  129->319 1brmA2 d.81.1.1 * 5.5e-81 48.2 %
:RPS:PFM   4->116 PF01118 * Semialdhyde_dh 2e-19 44.1 %
:RPS:PFM   139->318 PF02774 * Semialdhyde_dhC 1e-30 49.4 %
:HMM:PFM   139->318 PF02774 * Semialdhyde_dhC 2.2e-56 42.1 178/184  
:HMM:PFM   4->117 PF01118 * Semialdhyde_dh 1.2e-33 40.7 113/121  
:HMM:PFM   101->176 PF01960 * ArgJ 0.00037 27.1 70/388  
:BLT:SWISS 1->337 DHAS_AQUAE e-105 56.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88223.2 GT:GENE asd GT:PRODUCT aspartate-semialdehyde dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2458979..2460013) GB:FROM 2458979 GB:TO 2460013 GB:DIRECTION - GB:GENE asd GB:PRODUCT aspartate-semialdehyde dehydrogenase GB:PROTEIN_ID AAK88223.2 GB:DB_XREF GI:159140501 GB:GENE:GENE asd LENGTH 344 SQ:AASEQ MGFKVAIVGATGNVGREMLNILAERGFPADEVVPLASSRSQGTEVSYGDRTLKVSNLENYDFSDTDICLMSAGGEISKKWSPKIGQQGCVVIDNSSAWRYDQDVPLIVPEVNADAISGFTRKNIIANPNCSTAQLVVALKPLHDFAKIKRVVVSTYQSVSGAGKEGMDELFQQTRAVFVADPVETKKFTKRIAFNVIPHIDVFMEDGYTKEEWKVLAETKKMLDPKIKVTCTAVRVPVFIGHSESVNIEFENEITADQARDILREAPGCLVIDKHEDGGYITPVESAGEDATYISRIREDATVENGLNIWVVSDNLRKGAALNAIQIAELLVNRGLIKPRKAAA GT:EXON 1|1-344:0| BL:SWS:NREP 1 BL:SWS:REP 1->337|DHAS_AQUAE|e-105|56.8|336/340| BL:PDB:NREP 1 BL:PDB:REP 3->332|2qz9B|2e-95|53.5|327/335| RP:PDB:NREP 1 RP:PDB:REP 4->331|1brmB|6e-49|22.6|328/357| RP:PFM:NREP 2 RP:PFM:REP 4->116|PF01118|2e-19|44.1|111/120|Semialdhyde_dh| RP:PFM:REP 139->318|PF02774|1e-30|49.4|162/165|Semialdhyde_dhC| HM:PFM:NREP 3 HM:PFM:REP 139->318|PF02774|2.2e-56|42.1|178/184|Semialdhyde_dhC| HM:PFM:REP 4->117|PF01118|1.2e-33|40.7|113/121|Semialdhyde_dh| HM:PFM:REP 101->176|PF01960|0.00037|27.1|70/388|ArgJ| GO:PFM:NREP 8 GO:PFM GO:0005737|"GO:cytoplasm"|PF01118|IPR000534| GO:PFM GO:0006520|"GO:cellular amino acid metabolic process"|PF01118|IPR000534| GO:PFM GO:0016620|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"|PF01118|IPR000534| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01118|IPR000534| GO:PFM GO:0005737|"GO:cytoplasm"|PF02774|IPR012280| GO:PFM GO:0008652|"GO:cellular amino acid biosynthetic process"|PF02774|IPR012280| GO:PFM GO:0016620|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"|PF02774|IPR012280| GO:PFM GO:0046983|"GO:protein dimerization activity"|PF02774|IPR012280| RP:SCP:NREP 2 RP:SCP:REP 2->157|2gyyA1|1e-36|37.6|149/150|c.2.1.3| RP:SCP:REP 129->319|1brmA2|3e-68|28.9|180/210|d.81.1.1| HM:SCP:REP 2->156|2g17A1|5e-52|46.7|152/0|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 129->319|1brmA2|5.5e-81|48.2|191/0|d.81.1.1|1/1|Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain| OP:NHOMO 1226 OP:NHOMOORG 997 OP:PATTERN 11-1--2322222222-11111121111111112111111111-111111111111111-211-1-11 2211211111111111111-1111111111111111111112111111111111111111221111122211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222212222221111122221111111111111111111111111111111111111-1111111-121111-11111111111111111111111111111-------------111111111111122111111111111111111111-111111111111121111111-1111222111111112221111111111111111111-111111111121111111111111111111111111111111111111111111111111122111111111111111111111111111----11111111111111111111-1111---111111-11111--11-111111122112222211111111111111111111122212121222222112111111111111111111111111111222211111221111111111111111111--1111111-11122221222222222222-2222222222222222222223222222222222222222222222222222-222222222222-1211111111111211122221222222222211111111112122222222222222222111--1111122222222222222111111111111111111111111----------1-------------------------1111111111111 ------1-----111-------1----1111-11111111-1111-11-11111-1--1---111111111111111-1111111111-121-1111111-11111-11-------------------------------------------------1--------------1-1111E112111113-111121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 98.5 SQ:SECSTR ccEEEEEEccccHHHHHHHHHHHHTTGGGGcEEEEEcccTTcccccTTccccccEETHHHHTccEEEEcccHHHHHHHHHHHHTTTcccEEEEcccTTTTcTTEEEEcHHHHHHHHHHHHHTTEEEEccHHHHHHHHHHHHHHTTTcEEEEEEEEEEcGGGTcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccTccTTccccccccTTcHHHHHHHTTccccEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHTTcccccccHHHHHHHccHHHHTTcccccEEEEEEcTTcTTEEEEEEEEETTcccccHHHHHHHHHHHHHTcccc##### DISOP:02AL 341-345| PSIPRED ccEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEccccccEEccccccEEEEEEccHHHHccccEEEEccccHHHHHHHHHHHHcccEEEEcccccccccccEEEEccccHHHHHcHHHccEEEcccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHccccEEEEcccccccccEEEEccccEEEEEEEEEccccccEEEEEEEEEccccHHHHHHHHHHHHHHHccccccccccc //